[IPSUR-commits] r81 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Dec 24 17:57:25 CET 2009
Author: gkerns
Date: 2009-12-24 17:57:25 +0100 (Thu, 24 Dec 2009)
New Revision: 81
Removed:
www/IPSUR_0.1-2.tar.gz
www/PACKAGES
www/PACKAGES.gz
www/description.php
www/features.php
www/graphics/
www/links.php
www/news.php
www/repThemes.rda
www/repdatadesc.rda
www/replisting
www/resources/
www/screens.php
www/screens/
Log:
clean up the website
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--- www/PACKAGES 2009-12-24 14:41:24 UTC (rev 80)
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-Package: IPSUR
-Version: 0.1-2
-Depends: R (>= 2.1.0), car (>= 1.0-15), grDevices, tcltk, utils
-Suggests: abind, distr, distrEx, effects (>= 1.0-7), foreign, grid,
- lattice, lmtest, MASS, mgcv, multcomp (>= 0.991-2), nlme, nnet,
- qcc, relimp, rgl, RODBC
-
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
- <title>IPSUR Project</title>
- <link rel="Shortcut Icon" href="favicon.ico">
-
- <style type="text/css">
- <!--
- @import url("main.css");
- body {
- background-image: url();
- }
- -->
- </style>
-</head>
-
-<body>
- <div align="center">
-
- <table width="700" height="100%" border="0" cellpadding="0" cellspacing="0">
- <tr>
- <td align="left" valign="top" bgcolor="#FFFFFF">
- <!-- All of the page content is in this table-->
-
-<!--BEGIN: Page Banner-->
-<?php
- include "banner.php";
-?>
-<!--END: Page Banner-->
-
-<!--BEGIN: Top Menu-->
-<?php
- include "topMenu.php";
-?>
-<!--END: Top Menu-->
-
-<!--BEGIN: Page content-->
-<p class="articleTitle">Description of IPSUR:</p>
-<blockquote>
-<p>
- <iframe width="600" height="700" src="http://cran.r-project.org/web/packages/RcmdrPlugin.IPSUR/index.html"></iframe>
-</p>
-</blockquote>
-
-<div class="articleTitle">Download</div>
-<blockquote>
- For a list of download options, please visit the <a href="download.php">downloads page</a>.
-</blockquote>
-<!--END: Page Content-->
-
-<!--BEGIN: Footer-->
- <p align="center">
- R logo © the R Foundation, <font face="Courier New"><a href="http://www.r-project.org" style="text-decoration: none"><span style="text-decoration: none">http://www.r-project.org</span></a></font>
- </p>
-<!--END: Footer-->
-
- <!--Close main table-->
- </td>
- </tr>
-</table>
-</div>
-</body>
-</html>
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--- www/features.php 2009-12-24 14:41:24 UTC (rev 80)
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@@ -1,253 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
- <title>IPSUR Project</title>
- <link rel="Shortcut Icon" href="favicon.ico">
-
- <style type="text/css">
- <!--
- @import url("main.css");
- body {
- background-image: url();
- }
- -->
- </style>
-</head>
-
-<body>
- <div align="center">
-
- <table width="700" height="100%" border="0" cellpadding="0" cellspacing="0">
- <tr>
- <td align="left" valign="top" bgcolor="#FFFFFF">
- <!-- All of the page content is in this table-->
-
-<!--BEGIN: Page Banner-->
-<?php
- include "banner.php";
-?>
-<!--END: Page Banner-->
-
-<!--BEGIN: Top Menu-->
-<?php
- include "topMenu.php";
-?>
-<!--END: Top Menu-->
-
-<!--BEGIN: Page Content-->
-<p class="articleTitle">Features of the IPSUR Package:</p>
-<blockquote>
-<p>
- This document describes selected features of the IPSUR package. There are three (3) sections.
-</p>
-
-<div id="list">
- <ol type="I">
- <li>
- THE R COMMANDER: describes extra features the IPSUR plugin offers.
- </li>
- <li>
- DATA: describes certain datasets provided by the package.
- </li>
- <li>
- DOCUMENTS: describes documents provided by the package.
- </li>
- </ol>
-
- <ol type="I">
- <li>
- THE R COMMANDER
- <ol type="A">
- <li>
- Statistics Menu
- <ul>
- <li>
- Summaries
- <ol type="i">
- <li>
- Allows numerical variables that are not necessarily factors to be
- tabularized, with a corresponding modification to the Chi-square
- goodness-of-fit test.
- </li>
- <li>
- Sample skewness and kurtosis were added to the Numerical Summaries.
- </li>
- <li>
- Adds Fisher's exact test with a simulate p-value option.
- </li>
- <li>
- Calculates relative frequencies instead of percentages.
- </li>
- </ol>
- </li>
- <li>
- Contingency Tables
- <ol type="i">
- <li>
- Option "Add Marginal Distributions" is available which
- adds column and row sums to table.
- </li>
- <li>
- Hypothesis Tests has additional "Simulate p-value"
- option with customizable number of Iterations.
- </li>
- </ol>
- </li>
- <li>
- Proportions
- <ol type="i">
- <li>
- Enter table... of summarized data for a one-sample proportion test.
- </li>
- <li>
- Enter table... of summarized data of independent samples for a test of equality of several proportions.
- </li>
- </ol>
- </li>
- <li>
- Power Menu: based on functions written by Peter Dalgaard
- <ol type="i">
- <li>
- Power calculation dialog for one sample, two sample, and paired t tests.
- </li>
- <li>
- Power calculation dialog for two sample proportion test.
- </li>
- <li>
- Power calculation dialog for balanced ANOVA.
- </li>
- </ol>
- </li>
- </ul>
- </li>
- <li>Graphs Menu
- <ul>
- <li>
- A Title field was added to the following plots:<br />
- Index Plot, Histogram, Boxplot, Quantile-comparison plot,
- Scatterplot, Scatterplot matrix, Line Plot, Bar Graph, XY
- Conditioning plot.
- </li>
- <li>
- Boxplot has additional options “Horizontal”,
- "Notches" and "Variable box width",
- and Horizontal, Variable box width are the default settings.
- </li>
- <li>
- It is possible to plot Bar Graphs by groups. Further, if only summarized data are available then you can "Enter a table" for a bar graph.
- </li>
- <li>
- Pareto Diagrams were added.
- </li>
- <li>
- Strip charts were added.
- </li>
- </ul>
- </li>
- <li>
- Distributions Menu
- <ul>
- <li>
- Birthday Problem dialog menu available corresponding to the
- stats functions pbirthday() and qbirthday(). These two functions
- were modified and named pbirthday.ipsur() and qbirthday.ipsur()
- to give the precise answer (instead of asymptotics) in the case
- of exactly two coincidences.
- </li>
- <li>
- All parameter fields for each distribution are modified so that
- mathematical expressions may be entered, instead of the default
- restriction that only numbers may be entered into fields. For this
- reason, we may enter p=1/3 in the binomial menu or perhaps sd=7/sqrt(31)
- in a standard deviation field.
- </li>
- <li>
- Each distribution has a Simulate variates... option. Simulations are
- generated "transposed" from the standard Commander, with
- rows as observations and columns as samples. The name of each generated
- column by default takes the form "model.sim#", for example,
- binom.sim1, binom.sim2, etc. The columns may be stored in the Active
- Data Set or in a new dataset (of customizable length) by default named
- "Simset". All parameters for the respective distributions
- are available. To generate multiple columns, a "Number of samples
- " field is available.
- </li>
- <li>
- The discrete uniform distribution is available for simulation.
- </li>
- <li>
- Noncentrality parameter fields added to Beta, Chisquared, F, and Student's
- t distribution.
- </li>
- <li>
- A Sampling Distributions menu is added. This is similar to (and indeed was
- wholly inspired by) the Distributions menu in R Commander, with cosmetic
- differences to the interface. Rows are samples and columns are observations.
- Noncentrality parameters are available. A difference is that one may calculate up to three (3) sample statistics of choice from the simulated values,
- which can be later analyzed with the R Commander. A "discard original
- observations" option is available in case the number of simulated values
- is inconveniently large.
- </li>
- <li>
- Discrete CDFs are plotted as right-continuous step functions.
- </li>
- <li>
- Plots for Quantile functions are available, and in the discrete case are left-continuous step functions.
- </li>
- </ul>
- </li>
- </ol>
- </li>
- <li>
- DATA
- <ol type="A">
- <li>
- RcmdrTestDrive: These are simulated data specifically designed to allow the inexperienced
- user to browse the capabilities of the R Commander. The R Commander has extensive
- functionality, but many options are unavailable unless the correct types of data are
- loaded in the Active Data Set. This data set was randomly generated so that, when loaded,
- essentially all R Commander options would be available for the student to investigate.
- These data are entirely fictional.
- </li>
- <li>
- FeedingTimes: Data were collected concerning the feeding times of a recent newborn, Anna
- Lu Kerns. Variables include age in days, clock time, type of food, the length of feeding
- time (min), and amount of food (oz). (Only beginning of dataset so far.)
- </li>
- <li>
- BloodPressure: Data were collected from 2004 through 2006 from Taoying Bian concerning
- blood pressure and heart rate. Variables include date, time, systolic and diastolic blood
- pressure, and heart rate.
- </li>
- </ol>
- </li>
- <li>
- DOCUMENTS
- <ol type="A">
- <li>
- "Murder Madness in Toon Town". An amusing tale written to relate the fictional
- variables in the RcmdrTestDrive dataset. An original story contributed by Jeff Cornfield
- in Summer 2006.
- </li>
- </ol>
- </li>
- </ol>
-</div>
-
-</blockquote>
-<!--END: Page Content-->
-
-<!--BEGIN: Footer-->
- <p align="center">
- R logo © the R Foundation, <font face="Courier New"><a href="http://www.r-project.org" style="text-decoration: none"><span style="text-decoration: none">http://www.r-project.org</span></a></font>
- </p>
-<!--END: Footer-->
-
- <!--Close main table-->
- </td>
- </tr>
-</table>
-</div>
-</body>
-</html>
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--- www/links.php 2009-12-24 14:41:24 UTC (rev 80)
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
- <title>IPSUR Project</title>
- <link rel="Shortcut Icon" href="favicon.ico">
-
- <style type="text/css">
- <!--
- @import url("main.css");
- body {
- background-image: url();
- }
- -->
- </style>
-</head>
-
-<body>
- <div align="center">
-
- <table width="700" height="100%" border="0" cellpadding="0" cellspacing="0">
- <tr>
- <td align="left" valign="top" bgcolor="#FFFFFF">
- <!-- All of the page content is in this table-->
-
-<!--BEGIN: Page Banner-->
-<?php
- include "banner.php";
-?>
-<!--END: Page Banner-->
-
-<!--BEGIN: Top Menu-->
-<?php
- include "topMenu.php";
-?>
-<!--END: Page Content-->
-<p class="articleTitle">Some Links </p>
-<blockquote>
-
-<p>
- <a href="http://www.r-project.org/">The R Project for Statistical Computing</a>
- <br />
- <a href="http://cran.r-project.org/">CRAN</a>: The Comprehensive R Archive Network
-
- <br />
- <br />
- <a href="http://www.sciviews.org/_rgui/">R GUI Projects </a>
- <br />
- <a href="http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/">The R Commander</a> - John Fox
- <br />
- <a href="http://www.sciviews.org/SciViews-R/">SciViews-R</a> - Philippe Grosjean
- <br />
- <a href="http://wiener.math.csi.cuny.edu/pmg">PMG</a> - John Verzani
- <br />
-
- <br />
- <br />
- <a href="http://www.sciviews.org/_rgui/projects/Editors.html">Script Editors </a>
- <br />
- <a href="http://www.sciviews.org/Tinn-R/" class="name">Tinn-R</a>
- <br />
- <a href="http://www.textpad.com/">TextPad</a>
-</p>
-
-</blockquote>
-<!--END: Page Content-->
-
-<!--BEGIN: Footer-->
- <p align="center">
- R logo © the R Foundation, <font face="Courier New"><a href="http://www.r-project.org" style="text-decoration: none"><span style="text-decoration: none">http://www.r-project.org</span></a></font>
- </p>
-
- <!--Close main table-->
- </td>
- </tr>
-</table>
-</div>
-</body>
-</html>
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
- <title>IPSUR Project</title>
- <link rel="Shortcut Icon" href="favicon.ico">
-
- <style type="text/css">
- <!--
- @import url("main.css");
- body {
- background-image: url();
- }
- -->
- </style>
-</head>
-
-<body>
- <div align="center">
-
- <table width="700" height="100%" border="0" cellpadding="0" cellspacing="0">
- <tr>
- <td align="left" valign="top" bgcolor="#FFFFFF">
- <!-- All of the page content is in this table-->
-
-<!--BEGIN: Page Banner-->
-<?php
- include "banner.php";
-?>
-<!--END: Page Banner-->
-
-<!--BEGIN: Top Menu-->
-<?php
- include "topMenu.php";
-?>
-<!--END: Top Menu-->
-
-<!--BEGIN: Page Content-->
-<p class="articleTitle">What's New In the IPSUR Package </p>
-<blockquote>
-<p>
- This document collects new features that are planned for the development version of IPSUR
-</p>
-<p>
- Version
-</p>
-
-<div id="list">
- <ul>
- <li>
- 0.1-3:
- <ul>
- <li>
- Features
- <ol type="1">
- <li>
- Plots of quantile functions
- </li>
- <li>
- Optimize simulations routines
- </li>
- <li>
- Implement distr, distrEx, packages
- </li>
- <li>
- More data
- </li>
- </ol>
- </li>
- </ul>
- </li>
- <li>
- 0.1-2
- <ul>
- <li>
- Features
- <ol type="1">
- <li>
- Updated to Rcmdr 1.2-6
- </li>
- <li>
- Added suggested packages distr, distrEx
- </li>
- <li>
- Updated and completed BloodPressure data
- </li>
- </ol>
- </li>
- <li>
- Bugs
- <ol type="1">
- <li>
- Influence plot bug fixed
- </li>
- </ol>
- </li>
- </ul>
- </li>
- <li>
- 0.1-1:
- <ul>
- <li>
- Features
- <ol type="1">
- <li>
- Pareto diagrams have option rainbow / nocolor
- </li>
- <li>
- Pareto diagrams print statistics in window
- </li>
- <li>
- Simulate... menu fields now labeled to distinguish from Sampling Dist...
- </li>
- <li>
- New additions to Bar Plot
- <ol type="i">
- <li>
- Variable(s) in Active Data Set...
- <ol type="a">
- <li>
- Plot Relative Frequencies option
- </li>
- <li>
- Rainbow color option
- </li>
- <li>
- Plot Ledgen option
- </li>
- <li>
- Plot by Groups
- </li>
- <li>
- Segmented bars or Side-by-side
- </li>
- </ol>
- </li>
- <li>
- Enter table... with all above options
- </li>
- </ol>
- </li>
- <li>
- New additions to Proportions menu:
- <ol type="i">
- <li>
- Test for equality of several proportions...
- </li>
- <li>
- Enter table for single sample...
- </li>
- <li>
- Enter table for independent samples...
- </li>
- </ol>
- </li>
- <li>
- RcmdrTestDrive was updated
- </li>
- <li>
- Plot F distribution... has now ncp parameter for density function (in R-2.4.0)
- </li>
- </ol>
- </li>
- <li>
- Bugs
- <ol type="1">
- <li>
- gammasimNumber bug fixed
- </li>
- <li>
- Simulate discrete uniform variates bug fixed (concerning adding to Active data set).
- </li>
- <li>
- UpdatedisunifsimNumber bug fixed
- </li>
- <li>
- Sampling Distributions => Discrete Uniform was mislabeled Cauchy
- </li>
- <li>
- Loading required packages at startup bug fixed
- </li>
- <li>
- Empty fields bug in Probability menu fixed
- </li>
- </ol>
- </li>
- </ul>
- </li>
- <li>
- 0.1-0: IPSUR is introduced. See <a href="features.php">FEATURES</a>
- </li>
- </ul>
-</div>
-
-</blockquote>
-<!--END: Page Content-->
-
-<!--BEGIN: Footer-->
- <p align="center">
- R logo © the R Foundation, <font face="Courier New"><a href="http://www.r-project.org" style="text-decoration: none"><span style="text-decoration: none">http://www.r-project.org</span></a></font>
- </p>
-<!--END: Footer-->
-
- <!--Close main table-->
- </td>
- </tr>
-</table>
-</div>
-</body>
-</html>
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--- www/replisting 2009-12-24 14:41:24 UTC (rev 80)
+++ www/replisting 2009-12-24 16:57:25 UTC (rev 81)
@@ -1,6 +0,0 @@
-repname: IPSUR Repository
-reptype: package
-repaddrBase: http://www.cc.ysu.edu/~gjkerns/IPSUR/package
-repaddrPath: newRepos
-reprellevel: release
-
Deleted: www/screens.php
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--- www/screens.php 2009-12-24 14:41:24 UTC (rev 80)
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1" />
- <title>IPSUR Project</title>
- <link rel="Shortcut Icon" href="favicon.ico">
-
- <style type="text/css">
- <!--
- @import url("main.css");
- body {
- background-image: url();
- }
- -->
- </style>
-</head>
-
-<body>
- <div align="center">
-
- <table width="700" height="100%" border="0" cellpadding="0" cellspacing="0">
- <tr>
- <td align="left" valign="top" bgcolor="#FFFFFF">
- <!-- All of the page content is in this table-->
-
-<!--BEGIN: Page Banner-->
-<?php
- include "banner.php";
-?>
-<!--END: Page Banner-->
-
-<!--BEGIN: Top Menu-->
-<?php
- include "topMenu.php";
-?>
-<!--END: Top Menu-->
-
-<!--BEGIN: Page Content-->
-<p class="articleTitle">3D Scatterplots:</p>
-<div align="center">
- <img src="screens/3DScatterplot.png" alt="3D Scatterplot" width="302" height="276" />
-</div>
-
-<p class="articleTitle">Right-Continuous CDFs:</p>
-<div align="center">
- <img src="screens/BinomCDF.gif" alt="Binomial Distribution" width="701" height="355" />
-</div>
-
-<p class="articleTitle">Pareto Diagrams:</p>
-<div align="center">
- <img src="screens/Pareto.gif" alt="Pareto Diagrams" width="680" height="545" />
-</div>
-
-<p class="articleTitle">Strip Charts:</p>
-<div align="center">
- <img src="screens/Strip.gif" alt="Strip Chart" width="690" height="450" />
-</div>
-
-<p class="articleTitle">Bar Graphs:</p>
-<div align="center">
- <img src="screens/BarGraphs.gif" alt="Bar Graph" />
-</div>
-<!--END: Page Content-->
-
-<!--BEGIN: Footer-->
- <p align="center">
- R logo © the R Foundation, <font face="Courier New"><a href="http://www.r-project.org" style="text-decoration: none"><span style="text-decoration: none">http://www.r-project.org</span></a></font>
- </p>
-<!--END: Footer-->
-
- <!--Close main table-->
- </td>
- </tr>
-</table>
-</div>
-</body>
-</html>
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