[genoPlotR-help] scale_cex parameter

[Michael Muratet]

Hello again

The multiple dna_segs apparently won't work for me:

 > temp
[[1]]
   name   start     end strand       col lty lwd pch cex gene_type
1 LG_1 1138831 1138900     -1 #00FF00FF   1   1   8   1    arrows
2 LG_1 1138141 1142749      1 #44444411   1   1   8   1    arrows

[[2]]
   name   start     end strand       col lty lwd pch cex gene_type
1 LG_1 9241059 9241128      1 #00FF00FF   1   1   8   1    arrows
2 LG_1 9240763 9242602     -1 #44444411   1   1   8   1    arrows

 > is(temp[[1]])
[1] "dna_seg"
 > is(temp[[2]])
[1] "dna_seg"
 > plot_gene_map(dna_segs=temp)

This produces a single arrow. I presume it's because it's widely  
separated loci on the same scaffold.

I am trying to create something a little more informative and  
intuitive than a text table. It's almost there but I'm trying to tweak  
the last few bits.


Mike


Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
mmuratet at hudsonalpha.org
(256) 327-0473 (p)
(256) 327-0966 (f)

Room 4005
601 Genome Way
Huntsville, Alabama 35806