[GenABEL-dev] GenABEL impute2databel Patch

[L.C. Karssen]

Hi Matthias,

Thank you for submitting this patch!

On 21-01-16 16:25, Matthias Wuttke wrote:
> Hi!
> 
> We imputed our genotypes to the 1000 Genomes project, phase 3. In order
> to be able to work with GenABEL/ProbABEL, I was required to shorten the
> long variant identifiers to less than 32 chars.

Interesting. I haven't looked at the code in much detail (time is
limited unfortunately), but can you tell me if this is a problem in
ProbABEL, GenABEL or both? An alternative to your patch could of course
be to allow longer variant names.

> 
> Therefore, I added an option to do so to the impute2databel function
> that takes a file with new (shorter) variant identifiers. Please find
> attached a patch in case you like the new option.
> 

I've committed it to SVN (r.2049), so it will be part of the next
GenABEL release.


Thanks again for your contributions to GenABEL and ProbABEL! They are
much appreciated.


Best regards,

Lennart.

> Best regards
> Matthias
> 
> 
> 
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> 

-- 
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L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org
GPG key ID: A88F554A
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