[GenABEL-dev] LATEX error on autoreconf

Frank, Alvaro Jesus alvaro.frank at rwth-aachen.de
Mon Oct 27 12:49:21 CET 2014


On a different NON 32bit system:
alvaro.frank@:/opt/omicabelnomm> svn checkout svn://svn.r-forge.r-project.org/svnroot/genabel/pkg/OmicABELnoMM/
A    OmicABELnoMM/OmicOUT
A    OmicABELnoMM/OmicOUT/main.cpp
A    OmicABELnoMM/AUTHORS
A    OmicABELnoMM/ChangeLog
A    OmicABELnoMM/src
A    OmicABELnoMM/src/AIOwrapper.h
A    OmicABELnoMM/src/Definitions.h
A    OmicABELnoMM/src/Utility.cpp
A    OmicABELnoMM/src/main.cpp
A    OmicABELnoMM/src/Algorithm.cpp
A    OmicABELnoMM/src/Utility.h
A    OmicABELnoMM/src/AIOwrapper.cpp
A    OmicABELnoMM/src/Algorithm.h
A    OmicABELnoMM/compile
A    OmicABELnoMM/libs
A    OmicABELnoMM/libs/include
A    OmicABELnoMM/libs/lib
A    OmicABELnoMM/README
A    OmicABELnoMM/tests
A    OmicABELnoMM/tests/test.cpp
A    OmicABELnoMM/tests/Makefile.am
A    OmicABELnoMM/configure.ac
A    OmicABELnoMM/doc
A    OmicABELnoMM/doc/howtocompile.txt
A    OmicABELnoMM/doc/UserGuide.tex
A    OmicABELnoMM/INSTALL
A    OmicABELnoMM/COPYING
A    OmicABELnoMM/test-driver
A    OmicABELnoMM/Makefile.am
A    OmicABELnoMM/NEWS
A    OmicABELnoMM/examples
A    OmicABELnoMM/examples/XL.fvd
A    OmicABELnoMM/examples/results
A    OmicABELnoMM/examples/exclude_individuals.txt
A    OmicABELnoMM/examples/interactions
A    OmicABELnoMM/examples/interactions/INTR0.fvi
A    OmicABELnoMM/examples/interactions/INT11.fvi
A    OmicABELnoMM/examples/interactions/INTR1.fvi
A    OmicABELnoMM/examples/interactions/INTRR.fvi
A    OmicABELnoMM/examples/interactions/Y.fvd
A    OmicABELnoMM/examples/interactions/INT0.fvd
A    OmicABELnoMM/examples/interactions/INT1.fvd
A    OmicABELnoMM/examples/interactions/INTR.fvd
A    OmicABELnoMM/examples/interactions/INT011.fvd
A    OmicABELnoMM/examples/interactions/Y.fvi
A    OmicABELnoMM/examples/interactions/INT01R.fvd
A    OmicABELnoMM/examples/interactions/INT0.fvi
A    OmicABELnoMM/examples/interactions/INT1RR.fvd
A    OmicABELnoMM/examples/interactions/INT1.fvi
A    OmicABELnoMM/examples/interactions/INTR.fvi
A    OmicABELnoMM/examples/interactions/INT011.fvi
A    OmicABELnoMM/examples/interactions/INT01R.fvi
A    OmicABELnoMM/examples/interactions/XL.fvd
A    OmicABELnoMM/examples/interactions/INT1RR.fvi
A    OmicABELnoMM/examples/interactions/XL.fvi
A    OmicABELnoMM/examples/interactions/XR.fvd
A    OmicABELnoMM/examples/interactions/INT10.fvd
A    OmicABELnoMM/examples/interactions/INT01.fvd
A    OmicABELnoMM/examples/interactions/INT11.fvd
A    OmicABELnoMM/examples/interactions/INTR0.fvd
A    OmicABELnoMM/examples/interactions/INTR1.fvd
A    OmicABELnoMM/examples/interactions/INTRR.fvd
A    OmicABELnoMM/examples/interactions/XR.fvi
A    OmicABELnoMM/examples/interactions/INT10.fvi
A    OmicABELnoMM/examples/interactions/INT01.fvi
A    OmicABELnoMM/examples/dosages_1.txt
A    OmicABELnoMM/examples/dosages_2.txt
A    OmicABELnoMM/examples/XL.fvi
A    OmicABELnoMM/examples/Y.fvd
A    OmicABELnoMM/examples/XR.fvd
A    OmicABELnoMM/examples/Y.fvi
A    OmicABELnoMM/examples/XR.fvi
A    OmicABELnoMM/examples/CreateData.R
 U   OmicABELnoMM
Checked out revision 1849.
alvaro.frank at rhein:/opt/omicabelnomm> cd OmicABELnoMM/
alvaro.frank at rhein:/opt/omicabelnomm/OmicABELnoMM> autoreconf -fi
configure.ac:53: error: possibly undefined macro: AC_MSG_FAILURE
      If this token and others are legitimate, please use m4_pattern_allow.
      See the Autoconf documentation.
configure.ac:55: error: possibly undefined macro: AC_MSG_NOTICE
autoreconf: /usr/bin/autoconf failed with exit status: 1
alvaro.frank@:/opt/omicabelnomm/OmicABELnoMM> lscpu
Architecture:          x86_64
CPU op-mode(s):        32-bit, 64-bit
Byte Order:            Little Endian
CPU(s):                48
On-line CPU(s) list:   0-47
Thread(s) per core:    1
Core(s) per socket:    12
CPU socket(s):         4
NUMA node(s):          8
Vendor ID:             AuthenticAMD
CPU family:            16
Model:                 9
Stepping:              1
CPU MHz:               800.000
BogoMIPS:              4200.05
Virtualization:        AMD-V
L1d cache:             64K
L1i cache:             64K
L2 cache:              512K
L3 cache:              5118K
NUMA node0 CPU(s):     0-5
NUMA node1 CPU(s):     6-11
NUMA node2 CPU(s):     12-17
NUMA node3 CPU(s):     18-23
NUMA node4 CPU(s):     24-29
NUMA node5 CPU(s):     30-35
NUMA node6 CPU(s):     36-41
NUMA node7 CPU(s):     42-47
alvaro.frank@:/opt/omicabelnomm/OmicABELnoMM> 

________________________________________
From: genabel-devel-bounces at lists.r-forge.r-project.org [genabel-devel-bounces at lists.r-forge.r-project.org] on behalf of Frank, Alvaro Jesus [alvaro.frank at rwth-aachen.de]
Sent: Monday, October 27, 2014 12:41 PM
To: L.C. Karssen; genabel-devel at lists.r-forge.r-project.org
Subject: Re: [GenABEL-dev] LATEX error on autoreconf

I think the 32bit problem is the fault here.
32 bit architecture is a valid working environment for most, i.e: Here at helmoholtz.



________________________________________
From: genabel-devel-bounces at lists.r-forge.r-project.org [genabel-devel-bounces at lists.r-forge.r-project.org] on behalf of L.C. Karssen [lennart at karssen.org]
Sent: Monday, October 27, 2014 12:40 PM
To: genabel-devel at lists.r-forge.r-project.org
Subject: Re: [GenABEL-dev] LATEX error on autoreconf

When googling:

On 27-10-14 12:34, L.C. Karssen wrote:
> possibly undefined macro: AC_MSG_FAILURE
>>       If this token and others are legitimate, please use m4_pattern_allow.

I got a link to a StackOverflow post [1] that says that you may not have
pkg-config installed. However, I think that pkg-config is installed by
default (because when trying to remove it I get lots of package
dependencies). An other suggestion in that SO question is that it may be
related to 32 bits architecture...


Lennart.


[1]
http://stackoverflow.com/questions/8811381/possibly-undefined-macro-ac-msg-error

--
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org
GPG key ID: A88F554A
-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

_______________________________________________
genabel-devel mailing list
genabel-devel at lists.r-forge.r-project.org
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel


More information about the genabel-devel mailing list