[GenABEL-dev] Missing file for unit test in GenABEL

[Yurii Aulchenko]

Dear Andreas,

Sorry it delay with answer.

We specifically remove unit tests before submitting to cran. Our dev
repo does contain a version with unit tests, also tags for the
versions.

So one option would be to use our code repo instead of what is on
cran. What do you think?

Yurii


----------------------
Yurii Aulchenko
(sent from mobile device)

> On Jun 26, 2014, at 15:47, Andreas Tille <andreas at an3as.eu> wrote:
>
> Hi Yurii,
>
>> On Fri, Jun 20, 2014 at 10:44:43AM +0200, Andreas Tille wrote:
>> Hi Yurii,
>>
>> I'm trying to update the Debian package of GenABEL.  Since some time
>> there is an effort to automatically run unit tests of software if
>> available.  Since I noticed that GenABEL comes with unit tests I
>> tried
>>
>> $ make test
>> export RCMDCHECK=FALSE;\
>>        cd ../../tests;\
>>        R --vanilla --slave < doRUnit.R
>> /bin/sh: 2: cd: can't cd to ../../tests
>> /bin/sh: 3: cannot open doRUnit.R: No such file
>> make: *** [test] Error 2
>>
>>
>> As you can see the file doRUnit.R is missing.  It would be great if you
>> could include this file into the source diustribution to make sure we
>> can reproduce your exact test procedure in the Debian package.
>
> I cloned https://github.com/cran/GenABEL.git and had a look into the
> code.  I realised that the last tag containing the file doRUnit.R was
> 1.6-7.  I wonder how you are doing unit testing in the current version.
>
> Thanks for any enlightenment
>
>      Andreas.
>
> --
> http://fam-tille.de