[GenABEL-dev] databel float type

[Frank, Alvaro Jesus]

Hi Maksim,

Thank you for the info. Sadly I have no idea how to do it.

A Frank
________________________________
From: Maksim Struchalin [m.v.struchalin at mail.ru]
Sent: Monday, July 28, 2014 6:29 PM
To: Frank, Alvaro Jesus; genabel-devel at lists.r-forge.r-project.org
Subject: Re: [GenABEL-dev] databel float type

Dear Frank,

Try to install the latest version of DatABEL from https://app.box.com/s/4rngaf6dp9rkn18i29e2 and run your script again. This version was submited on CRAN today and will be publically available soon.

Sorry for that your break was so small :-).
Maksim


On 28/07/2014 23:12, Frank, Alvaro Jesus wrote:
So yes, it seems utterly broken.
I am gonna take a small break until it is fixed.

-A Frank

________________________________
From: genabel-devel-bounces at lists.r-forge.r-project.org<mailto:genabel-devel-bounces at lists.r-forge.r-project.org> [genabel-devel-bounces at lists.r-forge.r-project.org<mailto:genabel-devel-bounces at lists.r-forge.r-project.org>] on behalf of Frank, Alvaro Jesus [alvaro.frank at rwth-aachen.de<mailto:alvaro.frank at rwth-aachen.de>]
Sent: Monday, July 28, 2014 6:03 PM
To: genabel-devel at lists.r-forge.r-project.org<mailto:genabel-devel at lists.r-forge.r-project.org>
Subject: [GenABEL-dev] databel float type

Hi all,

what is wrong with this? R:
---------------------------------------------------------------------------------------------


library(DatABEL)

n = 100 # number of individuals
l = 2    # number of covariates
m = 10 # number of snps
t = 5  # number of traits

set.seed(1001)
runif(3)

XL <- matrix(rnorm((l+1)*n),ncol=(l+1)) # first column should be ones (intercept)
for(i in 1:n*l){ if(sample(1:10,1) > 5) XL[i]=0/0}

colnames(XL) <- c("intercept", paste("cov",1:l,sep=""))
rownames(XL) <- paste("ind",1:n,sep="")
XL_db <- matrix2databel(XL,filename="XL",type="FLOAT")



---------------------------------------------------------------------------------------------
The error that I get is this:

file contains data of unknown type 5
Error in !.Call("assignDoubleMatrix", x at data, newi, newj, as.double(value),  :
  invalid argument type

I cannot create any more databel flaot files....


A Frank



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