[GenABEL-dev] Roadmap ProbABEL

[Maarten Kooyman]

Dear List,

Lennart and I did discus a roadmap for ProbABEL. We made this roadmap after comparing ProbABEL with other GWAS applications (more on this later). We are welcome for comments, ideas or patches. You will find here a small summary of our discussion.


-ProbABEL 0.4.3: bugfix release
- Fix regression in converting numbers from filevector/DatABEL files. Lennart already started on this :http://lists.r-forge.r-project.org/pipermail/genabel-commits/2014-January/000922.html

-ProbABEL 0.5.0: P-values and Faster
- Add P-values to output. (Most likely with help of BOOST library)
- Log likelihood is disabled by default since wald test is better.
- masking data in matrix before regression in a more effective way. Now this operation is done twice.
- Vectorize code for palinear with EIGEN library
- Optimize compiler flags: executables are unnecessary large in size and matrix calculations can go faster.
- Other fixes/opportunities.

- ProbABEL 0.5.1: palogist optimisations and bugfixes.
- Vectorize code for palogist
- bug fixes


With kind regards,

Maarten