[GenABEL-dev] Error wil testing ProbABEL 0.4.2

[Jean Mao]

Hi,

Thank you very much for providing this software to scientific community. 
We have installed it in our cluster for NIH scientists.

Recently, while trying to update to 0.4.2 version, I ran into error 
message when testing the installation. Attached is the log file. Any 
help will be appreciated. Thank you.

Jean Mao
Helix Staff
CIT, NIH
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   ProbABEL 0.4.2: checks/R-tests/test-suite.log
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# TOTAL: 3
# PASS:  1
# SKIP:  0
# XFAIL: 1
# FAIL:  1
# XPASS: 0
# ERROR: 0

.. contents:: :depth: 2

XFAIL: run_R_test_palogist.sh
=============================

Checking logistic regression...
Dose: check consistency of names		OK
Prob: check consistency of names		OK
Check consistency dose <-> prob gtdata		OK
Running ProbABEL...				OK
Comparing R output with ProbABEL output		Error: all.equal(dose.add.PA, dose.add.R, tol = tol) are not all TRUE
Execution halted

FAIL: run_R_test_pacox.sh
=========================

Checking Cox PH regression...
Loading required package: splines
Dose: check consistency of names		OK
Prob: check consistency of names		OK
Check consistency dose <-> prob gtdata		OK
Running ProbABEL...				OK
Comparing R output with ProbABEL output		Error: all.equal(dose.add.PA, dose.add.R, tol = tol) are not all TRUE
Execution halted