[GenABEL-dev] GenABEL tutorials to SVN - figures

[L.C. Karssen]

Dear all,

On 13-03-13 10:12, Yurii Aulchenko wrote:
> Dear All,
> 
> changing the subject a bit so it is easier to track things.
> 
> I think for one figure (figure 2 from
> http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0005472)
> we are fine - see below the extract from PLoS ONE site. It looks like we
> do not even need to request permission.

Good. +1 for Creative Commons and open access publishing!


> 
> I will investigate the issue with chapter "GWA analysis in presence of
> stratification: theory" of the tutorial further (it overlaps - both in
> figures and text - with a a chapter of a published book,
> http://www.sciencedirect.com/science/article/pii/B9780123751423100094).
> For the moment it may be more safe to just skip it in the SVN.

That's an interesting question since you are the author of that text. I
guess you'll need to dig a bit deeper into Elsevier's legal texts...


Lennart.

> 
> YA
> 
> Extract from http://www.plosone.org/static/editorial
> 
> 5. Copyright and Licensing
> 
> Open Access Agreement
> 
> Upon submitting an article, authors are asked to indicate their
> agreement to abide by an open access Creative Commons license (CC-BY).
> Under the terms of this license, authors retain ownership of the
> copyright of their articles. However, the license permits any user to
> download, print out, extract, reuse, archive, and distribute the
> article, so long as appropriate credit is given to the authors and the
> source of the work. The license ensures that the article will be
> available as widely as possible and that the article can be included in
> any scientific archive.
> 
> 
> On Wed, Mar 13, 2013 at 9:45 AM, Yurii Aulchenko
> <yurii.aulchenko at gmail.com <mailto:yurii.aulchenko at gmail.com>> wrote:
> 
>     I just realized there is yet another question.
> 
>     What we do about figures? There are two problems with these:
> 
>     1) they are binary files
> 
>     2) some (two?) of them are coming from journals/books, and we do not
>     have explicit copyright holder's permission - in that I would
>     definitely be unwilling to put these in a place where we can not
>     delete it forever (such as RForge SVN)
> 
>     With 2, I probably need to contact the copyright holders - this may
>     be or may be not a big deal; for now I can replace these parts with
>     "void"
> 
>     With 1 - what should we do? Put it on the server as data files?
> 
>     YA
> 
> 
>     On Wed, Mar 13, 2013 at 9:32 AM, Yurii Aulchenko
>     <yurii.aulchenko at gmail.com <mailto:yurii.aulchenko at gmail.com>> wrote:
> 
> 
>             > I put the
>             > data on the GenABEL.org site;
> 
>             With that you mean the free/non-problematic data, I assume.
> 
> 
>         Yes, sure
>          
> 
>             >
>             > I think I should make a new directory - say, 'tutorials' -
>             at the same
>             > level, as 'pkg', 'tags', 'www' and then will have a
>             sub-directory called
>             > 'GenABEL_general' to keep this general tutorial. What do
>             you think?
> 
>             I agree. That seems the most logical way. Alternatively we
>             can put
>             tutorials in the same directory as the respective package (e.g.
>             pkg/GenABEL), but that will probably mess up r-forge's
>             automatic package
>             building even more (than it is now because of the way we
>             need the
>             filevector files).
> 
> 
>         Ok. Will do that and comment on what is in. 
> 
>         Yurii
> 
> 
> 
> 
>     -- 
>     -----------------------------------------------------
>     Yurii S. Aulchenko
> 
>     [ LinkedIn <http://nl.linkedin.com/in/yuriiaulchenko> ] [ Twitter
>     <http://twitter.com/YuriiAulchenko> ] [ Blog
>     <http://yurii-aulchenko.blogspot.nl/> ]
> 
> 
> 
> 
> -- 
> -----------------------------------------------------
> Yurii S. Aulchenko
> 
> [ LinkedIn <http://nl.linkedin.com/in/yuriiaulchenko> ] [ Twitter
> <http://twitter.com/YuriiAulchenko> ] [ Blog
> <http://yurii-aulchenko.blogspot.nl/> ]

-- 
-----------------------------------------------------------------
L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org

Stuur mij aub geen Word of Powerpoint bestanden!
Zie http://www.gnu.org/philosophy/no-word-attachments.nl.html
------------------------------------------------------------------

-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 230 bytes
Desc: OpenPGP digital signature
URL: <http://lists.r-forge.r-project.org/pipermail/genabel-devel/attachments/20130313/4145859d/attachment.sig>