[GenABEL-dev] problem with Grammar-gamma

Yurii Aulchenko yurii.aulchenko at gmail.com
Fri Feb 15 19:22:06 CET 2013


Yep, and there are even more problems; - fixed in dev version (1.7-4) on
R-Forge

you can use the script

https://r-forge.r-project.org/scm/viewvc.php/pkg/GenABEL-general/scripts/makedistrib_GenABEL.sh?view=markup&root=genabel

to build the dev-version

best,
Yurii

On Fri, Feb 15, 2013 at 10:05 AM, Nicola Pirastu <darthastu at gmail.com>wrote:

> Sorry I forgot to change the object of the mail…
>
> N.
>
> Il giorno 15/feb/2013, alle ore 10:05, Nicola Pirastu <darthastu at gmail.com>
> ha scritto:
>
> > Dear List,
> >
> > I think I've spotted a small bug in the grammar function when
> method=="gamma",
> >
> > the problem is linked to this post.
> >
> > http://forum.genabel.org/viewtopic.php?f=6&t=753&p=1401#p1401
> >
> > Looking at the grammar code line 6 is:
> >
> >        out at results[, "effB"] <- out[,
> "chi2.1df"]/polyObject$grammarGamma$Beta
> >
> > while I think it should be:
> >
> >        out at results[, "effB"] <- out[,
> "effB"]/polyObject$grammarGamma$Beta
> >
> > Best.
> >
> > Nicola
>
>


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