[GenABEL-dev] Introducing OmicABELnoMM

Diego Fabregat Traver fabregat at aices.rwth-aachen.de
Mon Dec 16 15:17:46 CET 2013


Congrats guys! I didn't have the time to look at it carefully,
but from what I know it should be a pretty good piece of work ;)

Best,
Diego

On 16/12/13, "L.C. Karssen"  <lennart at karssen.org> wrote:

> Dear list,
> 
> As you may have noticed, I have committed a first version of
> OmicABELnoMM to SVN on R-forge this morning.
> OmicABELnoMM is the no-mixed-models version of OmicABEL, allowing rapid
> genome-wide association analysis (linear regression), especially for
> multiple traits ("omics" data).
> OmicABELnoMM was written from scratch by Alvaro Jesus Frank so that the
> algorithm is well tailored to the different mathematics. Alvaro works in
> the same team at RWTH Aachen as Diego Fabregat Traver of OmicABEL fame,
> under the supervision of Paolo Bientinesi, Yurii Aulchenko and,
> recently, myself.
> 
> Please note that OmicABELnoMM is still under development (thanks Yakov
> and Sodbo for your contributions!). Most notably, work is still being
> done on the exact output file format. At present the output is stored in
> a filevector-format file. This will probably remain the same, but the
> order in which the information (betas, standard errors) is stored may
> change.
> 
> These are the development plans we have for OmicABELnoMM in the near future:
> - Implement autotools configuration
> - Improve the output file format
> - Add documentation
> 
> 
> Best regards,
> 
> Lennart.
> 
> 
> -- 
> *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
> L.C. Karssen
> Utrecht
> The Netherlands
> 
> lennart at karssen.org
> http://blog.karssen.org
> GPG key ID: A88F554A
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> 
> 
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