[GenABEL-dev] The GenABEL suite and AutoMM

[L.C. Karssen]

Dear Yurii and others,

That sounds like a great opportunity! This can maybe help us out with
the lipidomics data we have in our group, and maybe later also with
results from expression studies...

Could you already share some details about AutoMM? Which programming
language was used (C/C++ I assume)? Which (af any) dependencies does it
have? Any idea as to when we can expect to see AutoMM "in person"?

Something that also comes to mind is how are we going to integrate
AutoMM into the family? For example, in terms of input and output file
formats, options (option names) etc.

As to the license, I'm glad to see that an open source license was
chosen for the project!


Lennart.

On 08-11-12 18:22, Yurii Aulchenko wrote:
> Dear All,
> 
> I would like to inform you about the AutoMM software project. Together
> with Diego Fabregat-Traver and prof. Paolo Bientinesi (who are the main
> contributors) we worked on speeding up the mixed-model based analysis
> (similar to what MixABEL::GWFGLS and GenABEL::mmscore), but also
> specifically tailored to the analysis of multiple traits (e.g. 'omics'
> data). The software is going to be released under LGPL. 
> 
> Given shared scope and compatible license, we thought that it may be
> good to distribute AutoMM as part of the GenABEL project - both for
> AutoMM and for the GenABEL project.
> 
> Let us know what you think.
> 
> best wishes,
> also on behalf of Diego and Paolo,
> Yurii
> 
> 
> _______________________________________________
> genabel-devel mailing list
> genabel-devel at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel
> 

-- 
-----------------------------------------------------------------
L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org

Stuur mij aub geen Word of Powerpoint bestanden!
Zie http://www.gnu.org/philosophy/no-word-attachments.nl.html
------------------------------------------------------------------

-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 230 bytes
Desc: OpenPGP digital signature
URL: <http://lists.r-forge.r-project.org/pipermail/genabel-devel/attachments/20121121/f26cd359/attachment.sig>