[GenABEL-dev] Interesting idea by Gulnara Svischeva

Yurii Aulchenko yurii.aulchenko at gmail.com
Wed Oct 12 11:14:21 CEST 2011


> I've attached the results of a quick comparison (only one calculation
> per data point) similar to the one you sent to this list on 2011-05-20.

Thanks for the graph! Looks good :)

> I'm a bit surprised by the fact that the computation seems to flatten at
> the end for all methods. After we have genotyped some more samples I'll
> try to add another data point.
>

Interesting. A bit of explanation is may be that any of these
procedures start with sanity checks and with "preparing the data". Bit
this overhead should not be too large compared to the actual running
time for e.g. old polygenic, so I am not sure this explains the
scaling graph 100%.

best wishes,
Yurii


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