[GenABEL-dev] [Genabel-commits] r666 - pkg/webpages

[Yurii Aulchenko]

Modified tutHowToInstallDevelVersion along the lines suggested by
Lennart and William.

Now this is ready to go into Tutorials section of the web-site

Yurii

On Fri, Mar 4, 2011 at 7:44 PM,  <noreply at r-forge.wu-wien.ac.at> wrote:
> Author: yurii
> Date: 2011-03-04 19:44:15 +0100 (Fri, 04 Mar 2011)
> New Revision: 666
>
> Modified:
>   pkg/webpages/tutHowToInstallDevelVersion.html
> Log:
> webpages how to install dev version -- few changes suggested in discussion
>
> Modified: pkg/webpages/tutHowToInstallDevelVersion.html
> ===================================================================
> --- pkg/webpages/tutHowToInstallDevelVersion.html       2011-02-28 17:23:34 UTC (rev 665)
> +++ pkg/webpages/tutHowToInstallDevelVersion.html       2011-03-04 18:44:15 UTC (rev 666)
> @@ -25,7 +25,7 @@
>  </a>
>  <p></p>
>
> -2) In order to be able to compile devel-dersion, you need to set
> +2) In order to be able to compile devel-version, you need to set
>  an environmental variable R_HOME to point the location, where
>  R is installed. We assume that you use Bash (most people do); if not,
>  try to figure out how you can set environmental variables for your particular environment (and let us know so we can add it here :) ).
> @@ -35,17 +35,19 @@
>  on Bash command prompt. Assuming R is installed at '/usr/bin', add the following lines to your ~/.bashrc file
>  <p></p>
>
> +<pre>
>  R_HOME=/usr/bin
> -<br>
>  export R_HOME
> +</pre>
>  <p></p>
>
>  or, you can try
>  <p></p>
>
> +<pre>
>  R_HOME=$(dirname $(which R))
> -<br>
>  export R_HOME
> +</pre>
>  <p></p>
>
>
> @@ -56,18 +58,20 @@
>  from CRAN; for that on R command line type
>  <p></p>
>
> +<pre>
>  install.packages("GenABEL",dependencies=c("Depends","Suggests"))
> -<br>
>  install.packages("roxygen")
> -<br>
>  install.packages("RUnit")
> +</pre>
>  <p></p>
>
>  3) Change to a place, where you want the source code
>  to go. Get to the latest code by
>  <p></p>
>
> +<pre>
>  svn export svn://svn.r-forge.r-project.org/svnroot/genabel/pkg
> +</pre>
>  <p></p>
>
>  This should create directory called 'pkg' with all packages
> @@ -77,21 +81,22 @@
>  4) Compile and install latest code by
>  <p></p>
>
> +<pre>
>  cd pkg
> -<br>
>  R CMD INSTALL DatABEL
> -<br>
>  R CMD INSTALL GenABEL
> -<br>
>  ... etc.
> +</pre>
>  <p></p>
>
>  Note some packages (e.g. ProbABEL) are not R packages; to
>  compile these use specific Makefile's, e.g.
>  <p></p>
> +
> +<pre>
>  cd ProbABEL
> -<br>
>  make
> +</pre>
>  <p></p>
>
>  FINITO! Enjoy :)
>
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