[GenABEL-dev] eQTL functionality

[L.C. Karssen]

Hi Jimmie,

As far as I know, no one is working on eQTL analyses within the GenABEL
project. 
Any contributions (and especially those in the form of code) are of
course very welcome. Hopefully we can give you some hints on some of the
more obscure parts of the code, if necessary. 


Best regards,

Lennart Karssen.

On vr, 2011-06-24 at 13:39 -0400, Chun (Jimmie) Ye wrote:
> hi all,
> 
> i was wondering if anyone is working on or has any interest in adding
> some functionality for handling expression data and performing eQTL
> analyses. in addition to the standard approaches, i have some
> additional approaches in mind for adjusting for heterogeneity (both in
> expression and population structure) that can be implemented. ideally,
> it would leverage the data structures in genabel to handle the large
> SNP arrays and possibly using some of the data structures in
> bioconductor for handling expression data. i am willing to contribute
> code.
> 
> thanks,
> 
> ~jimmie
> _______________________________________________
> genabel-devel mailing list
> genabel-devel at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel

-- 
-----------------------------------------------
L.C. Karssen
Erasmus MC
Department of Epidemiology
Room Ee2224

Postbus 2040
3000 CA Rotterdam
The Netherlands

phone: +31-10-7044217
fax: +31-10-7044657
email: l.karssen at erasmusmc.nl
GPG key ID: 0E1D39E3
-----------------------------------------------
-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: application/pgp-signature
Size: 198 bytes
Desc: This is a digitally signed message part
URL: <http://lists.r-forge.r-project.org/pipermail/genabel-devel/attachments/20110627/72827bb0/attachment.pgp>