[GenABEL-dev] Fwd: CRAN packages maintained by you

[Yurii S. Aulchenko]

Begin forwarded message:

> From: Kurt Hornik <Kurt.Hornik at wu.ac.at>
> Date: January 16, 2011 7:48:49 PM GMT+01:00
> To: a.statham at garvan.org.au, cbrown at opendatagroup.com, chris.jackson at mrc-bsu.cam.ac.uk 
> , christiane_raemsch at yahoo.de, edzer.pebesma at uni-muenster.de, etiennelaliberte at gmail.com 
> , fabiofrascati at yahoo.it, greg.snow at imail.org, grgoswami at gmail.com, guy.brock at louisville.edu 
> , i.aoultchenko at erasmusmc.nl, jeff at kanecap.com,  
> jjvanderwal at gmail.com, kamil.barton at go2.pl, kby at bios.unc.edu, kmatsuki at uwo.ca 
> , mark.hoebeke at jouy.inra.fr, pbrandt at utdallas.edu, regine.scheder at rub.de 
> , support at mango-solutions.com, taehun85 at snu.ac.kr,  
> templ at tuwien.ac.at, tongz at rci.rutgers.edu
> Cc: Kurt.Hornik at R-project.org
> Subject: CRAN packages maintained by you
> Reply-To: Kurt.Hornik at wu.ac.at
>
> Dear maintainers,
>
> This concerns the packages
>
>    BLCOP EMC EMCC EffectiveDose FD G1DBN GenABEL ISA MSBVAR MuMIn
>    PermuteNGS RSeqMeth SDMTools SMC VIM clValid denstrip distributions
>    formula.tools grt intamapInteractive metacor muscor mvtBinaryEP
>    obsSens orth pARccs sigma2tools tradeCosts
>
> maintained by one of you, for which R CMD check finds problems in the
> 'package name space information' check, see below for details.
>
> Can we pls have updates fixing these within the next 2 weeks?
>
> Note that other R CMD check problems may need to be addressed as well.
>
> Best
> -k
>
> ***********************************************************************
>
> Package: BLCOP Version: 0.2.4 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: exportData(monthlyReturns,  
> sp500Returns, US13wTB)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: EMC Version: 1.1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(print, EMC)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: EMCC Version: 1.1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(print, EMCC)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: EffectiveDose Version: 1.0-7 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: importClasses("locfit")
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: FD Version: 1.0-9 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: ade4:::is.euclid
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: G1DBN Version: 2.0 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: library(MASS)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: GenABEL Version: 1.6-4 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S4method("[", snp.data)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: ISA Version: 1.0-32 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: .onUnload(.path.packages(pkgname))
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: MSBVAR Version: 0.5.0 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(print,  
> posterior.fit.BVAR)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: MuMIn Version: 0.13.17 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: importsFrom(stats, AIC,  
> as.formula, coef, delete.response, deviance,
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: PermuteNGS Version: 1.0.3 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: imports("qvalue")
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: RSeqMeth Version: 1.0.2 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: UseDynLib(RSeqMeth)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: SDMTools Version: 1.1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: .onLoad(adehabitat)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: SMC Version: 1.0 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(print, SMC)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: VIM Version: 1.4.2 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: importsFrom(car, box.cox,  
> box.cox.powers)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: clValid Version: 0.6-1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: function(lib, pkg)  
> require(methods)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: denstrip Version: 1.5 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(densregion, survfit)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: distributions Version: 1.3 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: .onUnload(.path.packages(pkgname))
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: formula.tools Version: 1.0.1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(terms, call)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: grt Version: 0.1-1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3mothod(scale, glc)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: intamapInteractive Version: 1.0-10 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(preProcess, removeBias)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: metacor Version: 1.0-1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: gsl:::hyperg_2F1
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: muscor Version: 0.2 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: UseDynLib(muscor)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: mvtBinaryEP Version: 1.0 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: .onLoad(lib, pkg)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: obsSens Version: 1.0 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: S3Method(print, summary)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: orth Version: 1.5 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: function(lib, pkg) {
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: pARccs Version: 0.2-2 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: UseDynLib(pARccs)
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: sigma2tools Version: 1.2.5 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: .onUnload(.path.packages(pkgname))
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.
>
> Package: tradeCosts Version: 0.3-1 Flavor: r-devel-linux-ix86
> Check: package name space information ... ERROR
> Invalid NAMESPACE file, parsing gives:
> Error: unknown namespace directive: exportData("trade.mar.2007",  
> "dynamic.mar.2007", "static.mar.2007")
>
> See section 'Package name spaces' of the 'Writing R Extensions'  
> manual.

-----------------------------------------------------------
Yurii Aulchenko
Erasmus MC Rotterdam
Department of Epidemiology, Ee 2200
Postbus 2040, 3000 CA Rotterdam
The Netherlands

phone: +31107043486
fax: +31107044657