[GenABEL-dev] faster polygenic

[Yurii Aulchenko]

Many thanks, Xia, I have your changes committed to the devel-version.

Should update quite a few posts on forum when 1.6-6 released -- with
polygenic_hglm many answers become quite trivial!

Only change I did

#' @keywords hglm, kinship, polygenic

to

#' @keywords htest

My understanding is that 'keywords' must one of the valid keywords
which can be viewed with

library(gtools)
keywords()

best wishes,
Yurii


On Sun, Apr 17, 2011 at 3:49 PM, Xia Shen <xia.shen at lcb.uu.se> wrote:
> Hi Yurii,
>
> Attached is an updated version of polygenic_hglm.
>
> - The reference list is now in a chronological order.
> - Default convergence criteria is now 1e-6. In the documentation of @param conv, we say for great precision, use 1e-8.
> - An example is provided showing how one can test the fixed effects parameters and how the standard errors can be extracted.
>
> Cheers
>
> Xia