[GenABEL-dev] bed format
Yurii Aulchenko
yurii.aulchenko at gmail.com
Tue Dec 7 09:23:05 CET 2010
Thank you, Tagir!
Filed that in at
https://r-forge.r-project.org/tracker/index.php?func=detail&aid=1226&group_id=505&atid=2061
2010/12/7 Tagir F. Valeev <amaembo at gmail.com>:
> Hello!
>
> YSA> ok, let us do the following:
>
> YSA> * Fedor or Tagir, please send me a good link to the description of
> YSA> 'bed' format -- I will file in feature request myself
>
> The only 'official' description I've seen is here:
> http://genome.ucsc.edu/FAQ/FAQformat.html#format1
> Actually it's loosely defined. It's tab separated file describing one
> feature per row where first three fields are chromosome (chr1, chrX,
> etc.); feature start and feature end coordinates. Subsequent fields
> are actually used for any custom annotation, though geneXplain tries
> to use information from them according to this document (for example
> it reads strand from field#6).
>
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