[Genabel-commits] r1930 - in branches/ProbABEL-v0.4.4-hotfix/ProbABEL: doc src

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2015-03-16 23:01:14 +0100 (Mon, 16 Mar 2015)
New Revision: 1930

Modified:
   branches/ProbABEL-v0.4.4-hotfix/ProbABEL/doc/ChangeLog
   branches/ProbABEL-v0.4.4-hotfix/ProbABEL/src/command_line_settings.cpp
Log:
Fix ProbABEL bug #6054 "Not all ProbABEL's short command line options are correctly parsed".
- Added colon for the v option (mmscore)
- Added k option (interaction-only)
- Reordered the short options in the same order as the long ones for easy reference.


Modified: branches/ProbABEL-v0.4.4-hotfix/ProbABEL/doc/ChangeLog
===================================================================
--- branches/ProbABEL-v0.4.4-hotfix/ProbABEL/doc/ChangeLog	2015-03-16 21:51:35 UTC (rev 1929)
+++ branches/ProbABEL-v0.4.4-hotfix/ProbABEL/doc/ChangeLog	2015-03-16 22:01:14 UTC (rev 1930)
@@ -1,3 +1,8 @@
+***** v.0.4.5 (2015)
+* Fixed bug #6054: "Not all ProbABEL's short command line options are
+  correctly parsed."
+
+
 ***** v.0.4.4 (2014.11.07)
 * Fixed bug #5729 in the Cox PH module. Some checks for problems with the
   regression were incorrectly implemented. Thanks to Matthias Wuttke from

Modified: branches/ProbABEL-v0.4.4-hotfix/ProbABEL/src/command_line_settings.cpp
===================================================================
--- branches/ProbABEL-v0.4.4-hotfix/ProbABEL/src/command_line_settings.cpp	2015-03-16 21:51:35 UTC (rev 1929)
+++ branches/ProbABEL-v0.4.4-hotfix/ProbABEL/src/command_line_settings.cpp	2015-03-16 22:01:14 UTC (rev 1930)
@@ -155,7 +155,7 @@
 void cmdvars::set_variables(int argc, char * argv[])
 {
     int next_option;
-    const char * const short_options = "p:i:d:m:n:c:o:s:t:g:a:erlhb:vu";
+    const char * const short_options = "p:i:d:m:n:c:o:s:t:g:a:relhb:k:v:u";
     // b - interaction parameter
     // ADD --fv FLAG (FILEVECTOR), IN WHICH CASE USE ALTERNATIVE
     // CONSTRUCTOR FOR GENDATA