[Genabel-commits] r1996 - pkg/GenABEL/man

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2015-07-08 09:29:09 +0200 (Wed, 08 Jul 2015)
New Revision: 1996

Modified:
   pkg/GenABEL/man/check.trait.Rd
Log:
Summary: Remove superfluous spaces from the documentation file of GenABEL::check.trait.
Brings it more in line with our coding standards.


Modified: pkg/GenABEL/man/check.trait.Rd
===================================================================
--- pkg/GenABEL/man/check.trait.Rd	2015-06-16 13:55:39 UTC (rev 1995)
+++ pkg/GenABEL/man/check.trait.Rd	2015-07-08 07:29:09 UTC (rev 1996)
@@ -2,11 +2,11 @@
 \alias{check.trait}
 \title{function to do primitive trait quality control}
 \description{
-This function check for outliers (using FDR framework) 
+This function check for outliers (using FDR framework)
 and plots the raw data.
 }
 \usage{
-check.trait(trait, data, fdrate = 0.05, graph = TRUE, binshow = FALSE, 
+check.trait(trait, data, fdrate = 0.05, graph = TRUE, binshow = FALSE,
 		qoption = "bh95")
 }
 \arguments{
@@ -19,13 +19,13 @@
 }
 \details{
 The P-value that a particulat measurment is an outlier is compted as folowing.
-Consider trait vector Y with particulat \eqn{i^{th}} measurment denodet as \eqn{y_i}. 
+Consider trait vector Y with particulat \eqn{i^{th}} measurment denodet as \eqn{y_i}.
 Let Y(-i) is vector, which is the same as Y, except that \eqn{i^{th}} measurment
-is dropped. Then Chi-square for measurment i is computed as 
+is dropped. Then Chi-square for measurment i is computed as
 
 \deqn{Chi_{i} = (mean(Y(-i)) - y_i)^2/var(Y(-i))}
 
-P-value is computed using 1 d.f., and the vector of P-values enters FDR 
+P-value is computed using 1 d.f., and the vector of P-values enters FDR
 computation procedure (BH95 by default).
 }
 \value{