[Genabel-commits] r1857 - pkg/OmicABELnoMM/src

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2014-10-27 22:47:58 +0100 (Mon, 27 Oct 2014)
New Revision: 1857

Modified:
   pkg/OmicABELnoMM/src/main.cpp
Log:
Some small spelling fixes in the OmicABELnoMM help text.


Modified: pkg/OmicABELnoMM/src/main.cpp
===================================================================
--- pkg/OmicABELnoMM/src/main.cpp	2014-10-27 21:41:50 UTC (rev 1856)
+++ pkg/OmicABELnoMM/src/main.cpp	2014-10-27 21:47:58 UTC (rev 1857)
@@ -27,32 +27,32 @@
 "Optional: \n\t"
 "-n --ngpred \t <#SNPcols> Number of columns in the geno file that represent"
     " a single SNP. \n\t"
-"-t --thr    \t <#CPUs> Number of computing threads to use to speed"
+"-t --thr    \t <#CPUs> Number of computing threads to use to speed up"
     " computations. Recommended is 4-8 per node (see MPI). \n\t"
 "-x --excl   \t <path/filename> file containing list of individuals to"
     " exclude from input files, (see example file). \n\t"
 "-d --pdisp  \t <0.0~1.0> Value to use as maximum threshold for"
     " significance.\n\t"
-"\t\t Results with P-values UNDER this threshold will be displayed in"
-    " the putput .txt file. \n\t"
-"-r --rdisp  \t <-10.0~1.0> Value to use as minimum threshold for R2. \n\t"
-"\t\t Results with R2-values ABOVE this threshold will be displayed in"
-    " the putput .txt file. \n\t"
+"\t\t Results with P-values BELOW this threshold will be displayed in"
+    " the output .txt file. \n\t"
+"-r --rdisp  \t <-10.0~1.0> Value to use as minimum threshold for R^2. \n\t"
+"\t\t Results with R^2-values ABOVE this threshold will be displayed in"
+    " the output .txt file. \n\t"
 "-b --stobin \t Flag that forces to ALSO store results in a smaller binary"
     " format (*.ibin & *.dbin). \n\t"
-"-s --psto   \t <0.0~1.0>  Results with P-values UNDER this threshold will"
-    " be displayed in the putput binary files. \n\t"
-"-e --rsto   \t <-10.0~1.0> Results with R2-values ABOVE this threshold"
-    " will be stored in the putput binary files. \n\t"
+"-s --psto   \t <0.0~1.0> Results with P-values BELOW this threshold will"
+    " be displayed in the output binary files. \n\t"
+"-e --rsto   \t <-10.0~1.0> Results with R^2-values ABOVE this threshold"
+    " will be stored in the output binary files. \n\t"
 "-i --fdcov  \t Flag that forces to include covariates (when its genotype"
-    " is significant) as part of the results stored \n\t"
+    " is significant) as part of the results stored. \n\t"
 "-f --fdgen  \t Flag that forces to consider all included results (causes"
-    " the analisis to ignores ALL threshold values). \n\t"
-"-j --additive  \t Flag that runs the analisis with an Additive Model"
+    " the analysis to ignore ALL threshold values). \n\t"
+"-j --additive  \t Flag that runs the analysis with an Additive Model"
     " with (2*AA,1*AB,0*BB) effects. \n\t"
-"-k --dominant  \t Flag that runs the analisis with an Dominant Model"
+"-k --dominant  \t Flag that runs the analysis with a Dominant Model"
     " with (1*AA,1*AB,0*BB) effects. \n\t"
-"-l --recessive \t Flag that runs the analisis with an Recessive Model"
+"-l --recessive \t Flag that runs the analysis with a Recessive Model"
     " with (1*AA,0*AB,0*BB) effects. \n\t"
 "-z --mylinear \t <path/filename> to read Factors 'f_i' for a Custom"
     " Linear Model with f1*X1,f2*X2,f3*X3...fn*X_ngpred as effects,\n\t"
@@ -67,10 +67,10 @@
 "              \t Formula: y~alpha*cov + beta*(f1*X1 + f2*X2 +...+"
     " fn*Xn), (see example files!). \n\t"
 "-v --simpleinter <path/filename> to read the interactions from; for"
-    " single analysis using multile interactions. \n\t"
+    " single analysis using multiple interactions. \n\t"
 "-w --multinter \t <path/filename> to read the interactions from; for"
     " multiple analysis using single interaction per analysis. \n\t"
-"-u --keepinter \t Flag that sets if the interaction analysis chose is"
+"-u --keepinter \t Flag that sets if the interaction analysis chosen is"
     " to too keep the dependent variable X.\n\t"
 "            \t If set, Formula: y~alpha*cov + beta_1*INT*X + beta_2*X,"
     " (see example files!). \n\t"