[Genabel-commits] r1728 - pkg/ProbABEL/doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2014-05-19 16:17:58 +0200 (Mon, 19 May 2014)
New Revision: 1728

Modified:
   pkg/ProbABEL/doc/ChangeLog
   pkg/ProbABEL/doc/INSTALL
Log:
Updated the ProbABEL ChangeLog and INSTALL files to reflect the fact that Eigen is now a dependency for ProbABEL.


Modified: pkg/ProbABEL/doc/ChangeLog
===================================================================
--- pkg/ProbABEL/doc/ChangeLog	2014-05-13 21:22:31 UTC (rev 1727)
+++ pkg/ProbABEL/doc/ChangeLog	2014-05-19 14:17:58 UTC (rev 1728)
@@ -1,3 +1,7 @@
+***** v.0.5.0 (2014.)
+* ProbABEL now depends on the Eigen library. The option to compile without
+  Eigen has been removed.
+
 ***** v.0.4.3 (2014.04.01)
 * Speed-up of a factor of ~ 2 for linear, logistic and Cox regression when
   using filevector input files.

Modified: pkg/ProbABEL/doc/INSTALL
===================================================================
--- pkg/ProbABEL/doc/INSTALL	2014-05-13 21:22:31 UTC (rev 1727)
+++ pkg/ProbABEL/doc/INSTALL	2014-05-19 14:17:58 UTC (rev 1728)
@@ -4,28 +4,21 @@
 (complementary) instructions on how to obtain and install ProbABEL.
 
 * Dependencies
-  ProbABEL can be compiled without depending on other
-  libraries. However, when the Eigen library is present
-  (http://eigen.tuxfamily.org) matrix manipulation is much more
-  efficient and fast. On Debian/Ubuntu systems the Eigen library can
-  be installed in the following way:
-apt-get install libeigen3-dev
+** The Eigen library
+   ProbABEL has one external dependency that has to be met before
+   compilation will succeed: it depends on the Eigen library
+   (http://eigen.tuxfamily.org) for fast matrix manipulation. On
+   Debian/Ubuntu systems the Eigen library can be installed in the
+   following way: apt-get install libeigen3-dev
 
-  If you install the eigen library by hand (e.g. after downloading the
-  files from the aforementioned website) you have to specify the
-  location of the header files when running ./configure (see below):
-./configure --with-eigen-include-path=/your/path/to/eigen
-  The default for this option is /usr/include/eigen3. This is the
-  directory in which files like Eigen/Dense and Eigen/Cholesky can be
-  found.
+   If you install the eigen library by hand (e.g. after downloading
+   the files from the aforementioned website) you have to specify the
+   location of the header files when running ./configure (see below):
+./configure --with-eigen-include-path=/your/path/to/eigen The
+   default for this option is /usr/include/eigen3. This is the
+   directory in which files like Eigen/Dense and Eigen/Cholesky can be
+   found. If ./configure cannot find the Eigen library it will say so.
 
-  If ./configure cannot find the Eigen library it will say so. To
-  disable the use of Eigen (even if the library is present) use:
-./configure --without-eigen
-  Note that we do not recommend building ProbABEL without EIGEN as
-  the non-EIGEN code is tested less well and we are preparing to
-  phase out the non-EIGEN code.
-
 * Compiling for Linux
   If you downloaded the source from SVN (this is not necessary when
   installing from the distributed .tar.gz file), run: