[Genabel-commits] r1665 - pkg/ProbABEL/checks/R-tests

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2014-03-31 22:24:43 +0200 (Mon, 31 Mar 2014)
New Revision: 1665

Modified:
   pkg/ProbABEL/checks/R-tests/Makefile.am
Log:
Disable the ProbABEL R check of the Cox model if the --without-eigen ./configure option is used. Without EIGEN we can't/don't check whether beta is infinite. This leads to a discrepancy between the R output and the ProbABEL output.

With this commit we simply tell Automake to expect the test to fail if --without-eigen is used.



Modified: pkg/ProbABEL/checks/R-tests/Makefile.am
===================================================================
--- pkg/ProbABEL/checks/R-tests/Makefile.am	2014-03-28 19:12:41 UTC (rev 1664)
+++ pkg/ProbABEL/checks/R-tests/Makefile.am	2014-03-31 20:24:43 UTC (rev 1665)
@@ -30,6 +30,11 @@
 ## The palogist R test still doesn't run correctly.
 XFAIL_TESTS = run_R_test_palogist.sh
 
+## The pacoxph R test fails on SNP 6 when EIGEN is not enabled.
+if !WITH_EIGEN
+XFAIL_TESTS += run_R_test_pacox.sh
+endif
+
 EXTRA_DIST = $(check_SCRIPTS) $(R_test_files)