[Genabel-commits] r1756 - pkg/ProbABEL/checks/inputfiles

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2014-06-24 11:39:39 +0200 (Tue, 24 Jun 2014)
New Revision: 1756

Added:
   pkg/ProbABEL/checks/inputfiles/README
Log:
Added a README file to the directory with input files for the ProbABEL tests that lists what the SNPs in the input files are testing.

The file can also be used for information on other files in this directory of course.


Added: pkg/ProbABEL/checks/inputfiles/README
===================================================================
--- pkg/ProbABEL/checks/inputfiles/README	                        (rev 0)
+++ pkg/ProbABEL/checks/inputfiles/README	2014-06-24 09:39:39 UTC (rev 1756)
@@ -0,0 +1,15 @@
+This README file describes the 'special' properties of the SNPs in the
+test input files, as well as any other relevant information related
+the files in the inputfiles directory.
+
+* The SNPs
+  - SNP 1: Tests multi-letter alleles (indel, e.g. from 1kG) in Al1 (bug
+           #2586).
+  - SNP 2: Tests multi-letter alleles (indel, e.g. from 1kG) in Al2 (bug
+           #2586); Tests NaN in genetic data.
+  - SNP 3:
+  - SNP 4:
+  - SNP 5: Tests low Rsq in info file.
+  - SNP 6: Tests low MAF, only one out of 200 people has a different dosage.
+
+* Other files