[Genabel-commits] r1666 - pkg/ProbABEL/doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2014-04-01 14:39:06 +0200 (Tue, 01 Apr 2014)
New Revision: 1666

Modified:
   pkg/ProbABEL/doc/ChangeLog
   pkg/ProbABEL/doc/ProbABEL_manual.tex
   pkg/ProbABEL/doc/pacoxph.1
   pkg/ProbABEL/doc/palinear.1
   pkg/ProbABEL/doc/palogist.1
   pkg/ProbABEL/doc/probabel.1
Log:
- Updated Changelog for v0.4.3 release
- Updated date in the ProbABEL docs.
- Also removed the eurosym package from the ProbABEL manual as we don't really need it (and it would mean self-compiling users or package builders need tohave another LaTeX package installed)


Modified: pkg/ProbABEL/doc/ChangeLog
===================================================================
--- pkg/ProbABEL/doc/ChangeLog	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/ChangeLog	2014-04-01 12:39:06 UTC (rev 1666)
@@ -1,11 +1,12 @@
-***** v.0.4.3 (2014.03)
-* Speed up of a factor of X after simplifying the way filevector data is
-  read in.
+***** v.0.4.3 (2014.04.01)
+* Speed-up of a factor of ~ 2 for linear, logistic and Cox regression when
+  using filevector input files.
 * Fixed bug #5404: "ProbABEL's R check for Cox regression doesn't check if
   the survival package is installed".
 * Fixed bug #5403: "The ProbABEL manual doesn't contain any information on
   how to install ProbABEL"
 
+
 ***** v.0.4.2 (2014.01.02)
 * The 'probabel.pl' script is now simply renamed to 'probabel' (a user
   shouldn't care what scripting language we use). For at least several
@@ -34,6 +35,7 @@
 * For developers: a start has been made on documenting the internal
   functions using Doxygen.
 
+
 ***** v.0.4.1 (2013.08.29)
 * Fix bug #4854: When using mmscore, there is one (nan) column missing in
   the output for low-frequency SNPs. Also includes a simplification of the

Modified: pkg/ProbABEL/doc/ProbABEL_manual.tex
===================================================================
--- pkg/ProbABEL/doc/ProbABEL_manual.tex	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/ProbABEL_manual.tex	2014-04-01 12:39:06 UTC (rev 1666)
@@ -11,11 +11,10 @@
   $^{2}${\small Erasmus MC, Rotterdam}\\
   $^{3}${\small Institute of Cytology and Genetics SD RAS, Novosibirsk}
 }
-\date{March 19, 2014}
+\date{April 1, 2014}
 
 
 \usepackage[utf8]{inputenc}
-\usepackage{eurosym}        % Makes the Euro symbol available.
 \usepackage[T1]{fontenc}
 \usepackage{textcomp}
 

Modified: pkg/ProbABEL/doc/pacoxph.1
===================================================================
--- pkg/ProbABEL/doc/pacoxph.1	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/pacoxph.1	2014-04-01 12:39:06 UTC (rev 1666)
@@ -1,4 +1,4 @@
-.TH pacoxph 1 "2 January 2014" "ProbABEL 0.4.3"
+.TH pacoxph 1 "01 April 2014" "ProbABEL 0.4.3"
 .SH NAME
 pacoxph \- Perform Genome-Wide Association Analysis using a linear model
 .SH SYNOPSIS

Modified: pkg/ProbABEL/doc/palinear.1
===================================================================
--- pkg/ProbABEL/doc/palinear.1	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/palinear.1	2014-04-01 12:39:06 UTC (rev 1666)
@@ -1,4 +1,4 @@
-.TH palinear 1 "2 January 2014" "ProbABEL 0.4.3"
+.TH palinear 1 "01 April 2014" "ProbABEL 0.4.3"
 .SH NAME
 palinear \- Perform Genome-Wide Association Analysis using a linear model
 .SH SYNOPSIS

Modified: pkg/ProbABEL/doc/palogist.1
===================================================================
--- pkg/ProbABEL/doc/palogist.1	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/palogist.1	2014-04-01 12:39:06 UTC (rev 1666)
@@ -1,4 +1,4 @@
-.TH palogist 1 "2 January 2014" "ProbABEL 0.4.3"
+.TH palogist 1 "01 April 2014" "ProbABEL 0.4.3"
 .SH NAME
 palogist \- Perform Genome-Wide Association Analysis using a linear model
 .SH SYNOPSIS

Modified: pkg/ProbABEL/doc/probabel.1
===================================================================
--- pkg/ProbABEL/doc/probabel.1	2014-03-31 20:24:43 UTC (rev 1665)
+++ pkg/ProbABEL/doc/probabel.1	2014-04-01 12:39:06 UTC (rev 1666)
@@ -1,4 +1,4 @@
-.TH ProbABEL 1 "2 January 2014" "ProbABEL 0.4.3"
+.TH ProbABEL 1 "01 April 2014" "ProbABEL 0.4.3"
 .SH NAME
 probabel \- Wrapper around the three ProbABEL binaries, simplifying their use
 .SH SYNOPSIS