[Genabel-commits] r1356 - in pkg/OmicABEL: . inc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2013-10-31 21:29:18 +0100 (Thu, 31 Oct 2013)
New Revision: 1356

Modified:
   pkg/OmicABEL/inc/make.inc.gnu-goto
   pkg/OmicABEL/make.inc
Log:
In OmicABEL: in the make.inc files for GNU with GOTOBLAS it was assumed that lapack and libgoto2 were installed in the user's homedir. If the user/administrator simply installs the packages for these two libs, we can simply change the LDLIBS entries as I did here. 

For future reference, on Ubuntu 13.10 these are the names of the packages: 
- liblapack-dev, liblapack3
- libblas-dev, libblas3, the libopenblas-dev package may also work


Modified: pkg/OmicABEL/inc/make.inc.gnu-goto
===================================================================
--- pkg/OmicABEL/inc/make.inc.gnu-goto	2013-10-30 16:40:46 UTC (rev 1355)
+++ pkg/OmicABEL/inc/make.inc.gnu-goto	2013-10-31 20:29:18 UTC (rev 1356)
@@ -2,4 +2,4 @@
 CFLAGS = -D_FILE_OFFSET_BITS=64 -pthread -fopenmp -DGOTO -DLINUX
 
 LDFLAGS =
-LDLIBS = $(HOME)/lapack/lapack_LINUX.a $(HOME)/GotoBLAS2/libgoto2.a -lgfortran -gfortranbegin -lpthread -lrt
+LDLIBS = -llapack -lblas -lgfortran -gfortranbegin -lpthread -lrt

Modified: pkg/OmicABEL/make.inc
===================================================================
--- pkg/OmicABEL/make.inc	2013-10-30 16:40:46 UTC (rev 1355)
+++ pkg/OmicABEL/make.inc	2013-10-31 20:29:18 UTC (rev 1356)
@@ -2,4 +2,4 @@
 CFLAGS = -D_FILE_OFFSET_BITS=64 -pthread -fopenmp -DGOTO -DLINUX
 
 LDFLAGS =
-LDLIBS = $(HOME)/lapack/lapack_LINUX.a $(HOME)/GotoBLAS2/libgoto2.a -lgfortran -gfortranbegin -lpthread -lrt
+LDLIBS = -llapack -lblas -lgfortran -gfortranbegin -lpthread -lrt