[Genabel-commits] r1167 - pkg/OmicABEL/doc

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2013-03-20 10:16:45 +0100 (Wed, 20 Mar 2013)
New Revision: 1167

Modified:
   pkg/OmicABEL/doc/README-reshuffle
Log:
edits in the beginning of the file

Modified: pkg/OmicABEL/doc/README-reshuffle
===================================================================
--- pkg/OmicABEL/doc/README-reshuffle	2013-03-20 08:48:03 UTC (rev 1166)
+++ pkg/OmicABEL/doc/README-reshuffle	2013-03-20 09:16:45 UTC (rev 1167)
@@ -2,14 +2,23 @@
 
 Parameters:
 
-For the first it should be file name without iout and out extensions:
-	(--B_eigen_1000) 
-	if your files are B_eigen.iout and B_eigen.out
+The first parameter tells the name of CLACK-GWAS output file (without iout 
+and out extensions), for example, the first parameter must be 
 
-Data dimensions 
-	(--datadims)  Gives back t, m, p
-output: "datadims.txt"
+	B_myeigen
+	 
+if CLAK-GWAS output files are B_myeigen.iout and B_myeigen.out
 
+A number of options allow to extract different types of information from 
+CLAK-GWAS outputs. 
+
+Data dimensions are obtained by adding option  
+
+	--datadims
+	
+which gives back t (number of traits), m (number of markers), p (number of 
+covariates + 2); the information is stored in a file named "datadims.txt"
+
 SNP names
 	default: (--snpnames) : all
 	by index (--snpnames=27) : name of snp#27