[Genabel-commits] r1165 - tutorials/GenABEL_general

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2013-03-19 21:23:53 +0100 (Tue, 19 Mar 2013)
New Revision: 1165

Modified:
   tutorials/GenABEL_general/GWA.Rnw
   tutorials/GenABEL_general/GenABEL-tutorial.Rnw
   tutorials/GenABEL_general/Makefile
Log:
small changes - cleaning up generation of HTML code

Modified: tutorials/GenABEL_general/GWA.Rnw
===================================================================
--- tutorials/GenABEL_general/GWA.Rnw	2013-03-19 20:15:05 UTC (rev 1164)
+++ tutorials/GenABEL_general/GWA.Rnw	2013-03-19 20:23:53 UTC (rev 1165)
@@ -770,7 +770,9 @@
 \Answer :
 <<>>=
 res0 <- qtscore(dm2,data=ge03d2,times=200,quiet=TRUE,trait="binomial")
-lambda(res0)
+### something funny is going on here
+### disabeling next line
+# lambda(res0)
 ds <- descriptives.scan(res0)
 ds
 @

Modified: tutorials/GenABEL_general/GenABEL-tutorial.Rnw
===================================================================
--- tutorials/GenABEL_general/GenABEL-tutorial.Rnw	2013-03-19 20:15:05 UTC (rev 1164)
+++ tutorials/GenABEL_general/GenABEL-tutorial.Rnw	2013-03-19 20:23:53 UTC (rev 1165)
@@ -39,6 +39,10 @@
   colorlinks=true, urlcolor=MidnightBlue, linkcolor=blue, %
   citecolor=webgreen}
 
+\else
+
+\usepackage{hyperref}
+
 \fi
 
 \usepackage{cite}
@@ -170,7 +174,10 @@
 \MakeUppercase{
 This work is licensed under the Creative Commons Attribution-ShareAlike 
 3.0 Unported License. To view a copy of this license, visit 
-\url{http://creativecommons.org/licenses/by-sa/3.0/} or send a letter to 
+%\url{  %%% commented this out as otherwise I fail to make html
+http://creativecommons.org/licenses/by-sa/3.0/
+%} 
+or send a letter to 
 Creative Commons, 444 Castro Street, Suite 900, Mountain View, 
 California, 94041, USA.
 }

Modified: tutorials/GenABEL_general/Makefile
===================================================================
--- tutorials/GenABEL_general/Makefile	2013-03-19 20:15:05 UTC (rev 1164)
+++ tutorials/GenABEL_general/Makefile	2013-03-19 20:23:53 UTC (rev 1165)
@@ -46,7 +46,7 @@
 	rm -fv Rplots.pdf *.RData mach1* *txt *PHE
 	rm -fv *idx *ilg *ind *pdf verbinp
 	rm -fv *.4?? *.css *.idv *.lg *.tmp *.xref
-	rm -fv *png *html figures/*.png
+	rm -fv *.png *.html figures/*.png
 	rm -rf GenABEL_tutorial_html
 	rm -rf RData
 	rm -fv *.tar.gz