[Genabel-commits] r1140 - in pkg/OmicABEL: . src

[noreply at r-forge.r-project.org]

Author: dfabregat
Date: 2013-03-14 12:57:43 +0100 (Thu, 14 Mar 2013)
New Revision: 1140

Modified:
   pkg/OmicABEL/Makefile
   pkg/OmicABEL/src/CLAK_GWAS.c
Log:
Added the -O2 option to the Makefile.
Removed the "alpha status" warning.


Modified: pkg/OmicABEL/Makefile
===================================================================
--- pkg/OmicABEL/Makefile	2013-03-13 22:07:17 UTC (rev 1139)
+++ pkg/OmicABEL/Makefile	2013-03-14 11:57:43 UTC (rev 1140)
@@ -3,7 +3,7 @@
 SRCDIR = ./src
 DRIVER = ./HP-GWAS
 
-CFLAGS+=-g -Wall -I $(SRCDIR)/  # -D__WORDSIZE=64
+CFLAGS+=-g -O2  -Wall -I $(SRCDIR)/  # -D__WORDSIZE=64
 LDLIBS += -lm
 
 SRCS = $(SRCDIR)/CLAK_GWAS.c $(SRCDIR)/fgls_chol.c $(SRCDIR)/fgls_eigen.c $(SRCDIR)/wrappers.c $(SRCDIR)/timing.c $(SRCDIR)/statistics.c $(SRCDIR)/REML.c $(SRCDIR)/optimization.c $(SRCDIR)/ooc_BLAS.c $(SRCDIR)/double_buffering.c $(SRCDIR)/utils.c $(SRCDIR)/GWAS.c $(SRCDIR)/databel.c 

Modified: pkg/OmicABEL/src/CLAK_GWAS.c
===================================================================
--- pkg/OmicABEL/src/CLAK_GWAS.c	2013-03-13 22:07:17 UTC (rev 1139)
+++ pkg/OmicABEL/src/CLAK_GWAS.c	2013-03-14 11:57:43 UTC (rev 1140)
@@ -85,9 +85,9 @@
 	/*exit(EXIT_FAILURE);*/
 	/*}*/
 	
-	printf("\n**************************************************************************\n");
-	printf("*** This is an alpha version under development. Use it at your own risk!!!\n");
-	printf("**************************************************************************\n\n");
+	/*printf("\n**************************************************************************\n");*/
+	/*printf("*** This is an alpha version under development. Use it at your own risk!!!\n");*/
+	/*printf("**************************************************************************\n\n");*/
 	print_info( &cf );
 
 	// Compute h and sigma
@@ -496,9 +496,9 @@
 	fflush( stdout );
 
 	if ( cf->var[0] == 'c' )
-		printf( "\nWill use OmicABEL-Chol with the following parameters\n" );
+		printf( "\nWill use CLAK-Chol with the following parameters\n" );
 	else
-		printf( "\nWill use OmicABEL-Eigen with the following parameters:\n" );
+		printf( "\nWill use CLAK-Eig with the following parameters:\n" );
 	printf( "  x_b: %zu\n", cf->x_b );
 	printf( "  y_b: %zu\n", cf->y_b );
 	printf( "  o_b: %zu\n", cf->ooc_b );