[Genabel-commits] r1279 - pkg/ProbABEL/examples

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2013-07-31 15:46:37 +0200 (Wed, 31 Jul 2013)
New Revision: 1279

Modified:
   pkg/ProbABEL/examples/example_bt.sh
   pkg/ProbABEL/examples/example_cox.sh
   pkg/ProbABEL/examples/example_mms.sh
   pkg/ProbABEL/examples/example_qt.sh
Log:
ProbABEL examples: Changed shell used in the examples to explicitely use Bash because of the bashisms used in run_diff.sh. On some systems (e.g. Ubuntu) the default /bin/sh points to another shell (Dash in case of Ubuntu) which has less/other capabilities. 




Modified: pkg/ProbABEL/examples/example_bt.sh
===================================================================
--- pkg/ProbABEL/examples/example_bt.sh	2013-07-25 06:24:54 UTC (rev 1278)
+++ pkg/ProbABEL/examples/example_bt.sh	2013-07-31 13:46:37 UTC (rev 1279)
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 # This script runs checks on ProbABEL's palogist module for
 # binary traits.
 

Modified: pkg/ProbABEL/examples/example_cox.sh
===================================================================
--- pkg/ProbABEL/examples/example_cox.sh	2013-07-25 06:24:54 UTC (rev 1278)
+++ pkg/ProbABEL/examples/example_cox.sh	2013-07-31 13:46:37 UTC (rev 1279)
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 # This script runs checks on ProbABEL's pacoxph module
 
 echo "Analysing Cox model..."

Modified: pkg/ProbABEL/examples/example_mms.sh
===================================================================
--- pkg/ProbABEL/examples/example_mms.sh	2013-07-25 06:24:54 UTC (rev 1278)
+++ pkg/ProbABEL/examples/example_mms.sh	2013-07-31 13:46:37 UTC (rev 1279)
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 # This script runs checks on ProbABEL's palinear module for
 # quantitative traits combined with the mmscore option.
 

Modified: pkg/ProbABEL/examples/example_qt.sh
===================================================================
--- pkg/ProbABEL/examples/example_qt.sh	2013-07-25 06:24:54 UTC (rev 1278)
+++ pkg/ProbABEL/examples/example_qt.sh	2013-07-31 13:46:37 UTC (rev 1279)
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 # This script runs checks on ProbABEL's palinear module for
 # quantitative traits.