[Genabel-commits] r1497 - tutorials/GenABEL_general

[noreply at r-forge.r-project.org]

Author: maksim
Date: 2013-12-20 07:28:26 +0100 (Fri, 20 Dec 2013)
New Revision: 1497

Modified:
   tutorials/GenABEL_general/GWA.Rnw
   tutorials/GenABEL_general/strat.Rnw
Log:
Spread two plots with too many overlapping dots from page 108 and 188 out on few plots. That was aksed by CRAN.

Modified: tutorials/GenABEL_general/GWA.Rnw
===================================================================
--- tutorials/GenABEL_general/GWA.Rnw	2013-12-20 03:56:16 UTC (rev 1496)
+++ tutorials/GenABEL_general/GWA.Rnw	2013-12-20 06:28:26 UTC (rev 1497)
@@ -249,8 +249,9 @@
 \begin{figure}[t]
 \centering
 <<fig=true,echo=false>>=
+par(mfcol=c(2,1))
 plot(an0, col=c("blue", "green"))
-add.plot(an0, df="Pc1df", col=c("lightblue", "lightgreen"))
+plot(an0, df="Pc1df", col=c("blue", "green"))
 @
 \caption{$-\log_{10}(P\text{-value})$ from the genome scan before QC procedure.
 Raw analysis: darker circles; corrected analysis: lighter circles}

Modified: tutorials/GenABEL_general/strat.Rnw
===================================================================
--- tutorials/GenABEL_general/strat.Rnw	2013-12-20 03:56:16 UTC (rev 1496)
+++ tutorials/GenABEL_general/strat.Rnw	2013-12-20 06:28:26 UTC (rev 1497)
@@ -865,9 +865,10 @@
 \begin{figure}[t]
 \centering
 <<fig=true,echo=false,results=hide>>=
+par(mfcol=c(3,1))
 plot(mms,df="Pc1df")
-add.plot(grs,df="Pc1df",col=c("lightgreen","lightblue"),cex=1.2)
-add.plot(qts)
+plot(grs,df="Pc1df", cex=1.2)
+plot(qts)
 @
 \caption{
 Comparison of FASTA (red), GRAMMAS (green),