[Genabel-commits] r1311 - in pkg/ProbABEL: checks/inputfiles examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun Aug 25 21:15:56 CEST 2013
Author: lckarssen
Date: 2013-08-25 21:15:56 +0200 (Sun, 25 Aug 2013)
New Revision: 1311
Added:
pkg/ProbABEL/checks/inputfiles/mmscore_InvSigma_aj.sex.age.small.dat
pkg/ProbABEL/checks/inputfiles/mmscore_gen.small.mldose
pkg/ProbABEL/checks/inputfiles/mmscore_pheno.small.PHE
Removed:
pkg/ProbABEL/examples/mmscore_InvSigma_aj.sex.age.small.dat
pkg/ProbABEL/examples/mmscore_gen.small.mldose
pkg/ProbABEL/examples/mmscore_pheno.small.PHE
Log:
Moved the small versions of the mmscore input files from the examples directory to checks/inputfiles/.
Copied: pkg/ProbABEL/checks/inputfiles/mmscore_InvSigma_aj.sex.age.small.dat (from rev 1301, pkg/ProbABEL/examples/mmscore_InvSigma_aj.sex.age.small.dat)
===================================================================
--- pkg/ProbABEL/checks/inputfiles/mmscore_InvSigma_aj.sex.age.small.dat (rev 0)
+++ pkg/ProbABEL/checks/inputfiles/mmscore_InvSigma_aj.sex.age.small.dat 2013-08-25 19:15:56 UTC (rev 1311)
@@ -0,0 +1,10 @@
+id4 0.0182686989332702 -1.85665437227337e-05 3.53271468398681e-05 -1.74067659984958e-05 7.43017952446252e-05 -4.50104634347183e-06 -0.000124985264981788 3.3678291247208e-05 5.91968582288439e-05 -0.000243645201364358
+id10 -1.85665437227311e-05 0.0182033225536506 -1.97096076622397e-05 -5.96162563595784e-05 -5.4476919601606e-05 -9.50226926118848e-05 8.62259783546112e-05 7.3858364200391e-05 3.10831766033596e-05 -0.000130544230147021
+id25 3.53271468398634e-05 -1.97096076622424e-05 0.0181688614380818 8.52863460066612e-05 -2.43025930791677e-05 2.81566776967037e-05 4.85600196715389e-06 -6.56752842697857e-06 -1.78033754378254e-05 -1.72662880972169e-05
+id33 -1.74067659984974e-05 -5.96162563595756e-05 8.52863460066646e-05 0.0181194433068409 -5.18411780980829e-05 1.50204770703661e-05 8.56024933212197e-06 4.86573389645691e-05 3.91817984047859e-05 2.79910558167308e-05
+id35 7.43017952446215e-05 -5.44769196016117e-05 -2.43025930791681e-05 -5.18411780980874e-05 0.018106435724767 2.19056691758357e-05 -0.000128600049471664 7.17399863803957e-06 -4.24308810003088e-05 -9.37329781039098e-06
+id58 -4.50104634347325e-06 -9.50226926118893e-05 2.81566776967108e-05 1.50204770703701e-05 2.19056691758332e-05 0.0179881874374435 -1.17277182399346e-05 -4.99197036924978e-05 5.71784745599148e-05 7.8067768163972e-05
+id68 -0.000124985264981788 8.62259783546178e-05 4.85600196715395e-06 8.56024933212903e-06 -0.000128600049471660 -1.17277182399364e-05 0.0181586089581595 2.04445273957100e-05 9.39041676761655e-05 2.69629411670812e-05
+id74 3.36782912472085e-05 7.38583642003905e-05 -6.56752842698657e-06 4.86573389645756e-05 7.17399863804557e-06 -4.99197036925027e-05 2.04445273957019e-05 0.0179962093643653 -0.000143202021910123 -0.000129318612519593
+id107 5.91968582288441e-05 3.10831766033532e-05 -1.78033754378163e-05 3.91817984047789e-05 -4.2430881000305e-05 5.71784745599093e-05 9.3904167676175e-05 -0.000143202021910134 0.0182122458019134 -8.89499732951819e-05
+id119 -0.000243645201364356 -0.000130544230147016 -1.72662880972305e-05 2.79910558167332e-05 -9.37329781039559e-06 7.80677681639793e-05 2.69629411670782e-05 -0.000129318612519587 -8.89499732951819e-05 0.0183196994000799
Copied: pkg/ProbABEL/checks/inputfiles/mmscore_gen.small.mldose (from rev 1301, pkg/ProbABEL/examples/mmscore_gen.small.mldose)
===================================================================
--- pkg/ProbABEL/checks/inputfiles/mmscore_gen.small.mldose (rev 0)
+++ pkg/ProbABEL/checks/inputfiles/mmscore_gen.small.mldose 2013-08-25 19:15:56 UTC (rev 1311)
@@ -0,0 +1,10 @@
+1->id4 MLDOSE 1 0 2 0 1
+1->id10 MLDOSE 2 2 1 2 0
+1->id25 MLDOSE 1 2 0 2 0
+1->id33 MLDOSE NaN 0 2 0 0
+1->id35 MLDOSE 1 0 0 0 0
+1->id58 MLDOSE 2 1 NaN 0 0
+1->id68 MLDOSE 0 1 1 0 1
+1->id74 MLDOSE 1 0 0 0 0
+1->id107 MLDOSE 1 0 NaN 1 0
+1->id119 MLDOSE 2 1 0 0 0
Copied: pkg/ProbABEL/checks/inputfiles/mmscore_pheno.small.PHE (from rev 1301, pkg/ProbABEL/examples/mmscore_pheno.small.PHE)
===================================================================
--- pkg/ProbABEL/checks/inputfiles/mmscore_pheno.small.PHE (rev 0)
+++ pkg/ProbABEL/checks/inputfiles/mmscore_pheno.small.PHE 2013-08-25 19:15:56 UTC (rev 1311)
@@ -0,0 +1,11 @@
+id height_residuals
+id4 -9.8130684563732
+id10 -3.47642823404311
+id25 6.26095765925731
+id33 11.3778459732314
+id35 -4.79095430879806
+id58 0.370774680307449
+id68 -8.65341409945518
+id74 4.95199124661318
+id107 -9.8280719102797
+id119 -2.05732829257249
Deleted: pkg/ProbABEL/examples/mmscore_InvSigma_aj.sex.age.small.dat
===================================================================
--- pkg/ProbABEL/examples/mmscore_InvSigma_aj.sex.age.small.dat 2013-08-25 19:12:59 UTC (rev 1310)
+++ pkg/ProbABEL/examples/mmscore_InvSigma_aj.sex.age.small.dat 2013-08-25 19:15:56 UTC (rev 1311)
@@ -1,10 +0,0 @@
-id4 0.0182686989332702 -1.85665437227337e-05 3.53271468398681e-05 -1.74067659984958e-05 7.43017952446252e-05 -4.50104634347183e-06 -0.000124985264981788 3.3678291247208e-05 5.91968582288439e-05 -0.000243645201364358
-id10 -1.85665437227311e-05 0.0182033225536506 -1.97096076622397e-05 -5.96162563595784e-05 -5.4476919601606e-05 -9.50226926118848e-05 8.62259783546112e-05 7.3858364200391e-05 3.10831766033596e-05 -0.000130544230147021
-id25 3.53271468398634e-05 -1.97096076622424e-05 0.0181688614380818 8.52863460066612e-05 -2.43025930791677e-05 2.81566776967037e-05 4.85600196715389e-06 -6.56752842697857e-06 -1.78033754378254e-05 -1.72662880972169e-05
-id33 -1.74067659984974e-05 -5.96162563595756e-05 8.52863460066646e-05 0.0181194433068409 -5.18411780980829e-05 1.50204770703661e-05 8.56024933212197e-06 4.86573389645691e-05 3.91817984047859e-05 2.79910558167308e-05
-id35 7.43017952446215e-05 -5.44769196016117e-05 -2.43025930791681e-05 -5.18411780980874e-05 0.018106435724767 2.19056691758357e-05 -0.000128600049471664 7.17399863803957e-06 -4.24308810003088e-05 -9.37329781039098e-06
-id58 -4.50104634347325e-06 -9.50226926118893e-05 2.81566776967108e-05 1.50204770703701e-05 2.19056691758332e-05 0.0179881874374435 -1.17277182399346e-05 -4.99197036924978e-05 5.71784745599148e-05 7.8067768163972e-05
-id68 -0.000124985264981788 8.62259783546178e-05 4.85600196715395e-06 8.56024933212903e-06 -0.000128600049471660 -1.17277182399364e-05 0.0181586089581595 2.04445273957100e-05 9.39041676761655e-05 2.69629411670812e-05
-id74 3.36782912472085e-05 7.38583642003905e-05 -6.56752842698657e-06 4.86573389645756e-05 7.17399863804557e-06 -4.99197036925027e-05 2.04445273957019e-05 0.0179962093643653 -0.000143202021910123 -0.000129318612519593
-id107 5.91968582288441e-05 3.10831766033532e-05 -1.78033754378163e-05 3.91817984047789e-05 -4.2430881000305e-05 5.71784745599093e-05 9.3904167676175e-05 -0.000143202021910134 0.0182122458019134 -8.89499732951819e-05
-id119 -0.000243645201364356 -0.000130544230147016 -1.72662880972305e-05 2.79910558167332e-05 -9.37329781039559e-06 7.80677681639793e-05 2.69629411670782e-05 -0.000129318612519587 -8.89499732951819e-05 0.0183196994000799
Deleted: pkg/ProbABEL/examples/mmscore_gen.small.mldose
===================================================================
--- pkg/ProbABEL/examples/mmscore_gen.small.mldose 2013-08-25 19:12:59 UTC (rev 1310)
+++ pkg/ProbABEL/examples/mmscore_gen.small.mldose 2013-08-25 19:15:56 UTC (rev 1311)
@@ -1,10 +0,0 @@
-1->id4 MLDOSE 1 0 2 0 1
-1->id10 MLDOSE 2 2 1 2 0
-1->id25 MLDOSE 1 2 0 2 0
-1->id33 MLDOSE NaN 0 2 0 0
-1->id35 MLDOSE 1 0 0 0 0
-1->id58 MLDOSE 2 1 NaN 0 0
-1->id68 MLDOSE 0 1 1 0 1
-1->id74 MLDOSE 1 0 0 0 0
-1->id107 MLDOSE 1 0 NaN 1 0
-1->id119 MLDOSE 2 1 0 0 0
Deleted: pkg/ProbABEL/examples/mmscore_pheno.small.PHE
===================================================================
--- pkg/ProbABEL/examples/mmscore_pheno.small.PHE 2013-08-25 19:12:59 UTC (rev 1310)
+++ pkg/ProbABEL/examples/mmscore_pheno.small.PHE 2013-08-25 19:15:56 UTC (rev 1311)
@@ -1,11 +0,0 @@
-id height_residuals
-id4 -9.8130684563732
-id10 -3.47642823404311
-id25 6.26095765925731
-id33 11.3778459732314
-id35 -4.79095430879806
-id58 0.370774680307449
-id68 -8.65341409945518
-id74 4.95199124661318
-id107 -9.8280719102797
-id119 -2.05732829257249
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