[Genabel-commits] r1308 - in pkg/ProbABEL: checks checks/old_verified_results examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun Aug 25 20:55:47 CEST 2013
Author: lckarssen
Date: 2013-08-25 20:55:47 +0200 (Sun, 25 Aug 2013)
New Revision: 1308
Added:
pkg/ProbABEL/checks/old_verified_results/
pkg/ProbABEL/checks/old_verified_results/coxph.out.txt_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_allcov_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_base_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_2df.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_2df.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_over_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_recess.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_2df.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_over_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_recess.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_over_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_recess.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_2df.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_2df.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_over_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_recess.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_over_domin.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_recess.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_robust_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/height_robust_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_allcov_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_base_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_robust_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/impute_with_missing_robust_int1_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/logist.out.txt_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/mmscore_add.out.txt.save
pkg/ProbABEL/checks/old_verified_results/regression_add.out.txt.save
Removed:
pkg/ProbABEL/examples/coxph.out.txt_add.out.txt.save
pkg/ProbABEL/examples/height_allcov_add.out.txt.save
pkg/ProbABEL/examples/height_base_add.out.txt.save
pkg/ProbABEL/examples/height_int1_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_2df.out.txt.save
pkg/ProbABEL/examples/height_ngp2_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_allcov_2df.out.txt.save
pkg/ProbABEL/examples/height_ngp2_allcov_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_allcov_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_allcov_over_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_allcov_recess.out.txt.save
pkg/ProbABEL/examples/height_ngp2_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_int1_2df.out.txt.save
pkg/ProbABEL/examples/height_ngp2_int1_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_int1_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_int1_over_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_int1_recess.out.txt.save
pkg/ProbABEL/examples/height_ngp2_over_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_recess.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_2df.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_int1_2df.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_int1_add.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_int1_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_int1_over_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_int1_recess.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_over_domin.out.txt.save
pkg/ProbABEL/examples/height_ngp2_robust_recess.out.txt.save
pkg/ProbABEL/examples/height_robust_add.out.txt.save
pkg/ProbABEL/examples/height_robust_int1_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_allcov_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_base_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_int1_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_robust_add.out.txt.save
pkg/ProbABEL/examples/impute_with_missing_robust_int1_add.out.txt.save
pkg/ProbABEL/examples/logist.out.txt_add.out.txt.save
pkg/ProbABEL/examples/mmscore_add.out.txt.save
pkg/ProbABEL/examples/regression_add.out.txt.save
Log:
Move the old saved results from the examples directory to checks/old_verified_results. They need to be checked (and if necessary) updated at a later time. For now at least this cleans up the example directory.
Copied: pkg/ProbABEL/checks/old_verified_results/coxph.out.txt_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/coxph.out.txt_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/coxph.out.txt_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/coxph.out.txt_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_add sebeta_SNP_add chi2_SNP
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 200 0.573752 19 204938 -0.0928573 0.19795 0.219808
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 200 0.573732 19 207859 -0.0925135 0.197763 0.218597
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 200 0.507545 19 211970 0.0266837 0.195088 0.0186915
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 200 0.570793 19 212033 -0.0850579 0.196281 0.187573
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 200 0.927268 19 217034 0.37385 0.351542 1.31268
Copied: pkg/ProbABEL/checks/old_verified_results/height_allcov_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_allcov_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_allcov_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_allcov_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_add sebeta_SNP_add chi2_SNP
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.564439 19 204938 171.113 2.18584 10.559 0.974984 -0.054599 0.0340798 -0.218693 0.734966 0.0905063
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.564412 19 207859 171.112 2.1855 10.559 0.974987 -0.0545991 0.0340799 -0.218352 0.734214 0.0904094
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.499 19 211970 170.526 2.1579 10.6567 0.98182 -0.0543002 0.0340771 0.279693 0.726342 0.151548
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.561132 19 212033 171.108 2.17855 10.559 0.974933 -0.0545851 0.0340794 -0.216918 0.7259 0.0912809
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.929684 19 217034 166.583 3.17443 10.782 0.966718 -0.0540547 0.0338095 2.23335 1.30142 2.98652
Copied: pkg/ProbABEL/checks/old_verified_results/height_base_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_base_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_base_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_base_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_add sebeta_SNP_add chi2_SNP
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.564439 19 204938 -0.218693 0.734966 0.0905063
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.564412 19 207859 -0.218352 0.734214 0.0904094
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.499 19 211970 0.279693 0.726342 0.151548
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.561132 19 212033 -0.216918 0.7259 0.0912809
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.929684 19 217034 2.23335 1.30142 2.98652
Copied: pkg/ProbABEL/checks/old_verified_results/height_int1_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_int1_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_int1_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_int1_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_add sebeta_SNP_add beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.564439 19 204938 1.0413 1.04755 -2.45886 1.46382 -1.09802 2.9689
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.564412 19 207859 1.0407 1.04645 -2.45714 1.46231 -1.0957 2.9707
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.499 19 211970 0.820606 0.998694 -1.15094 1.45671 -0.99729 0.792306
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.561132 19 212033 1.02261 1.02951 -2.44156 1.44532 -1.06052 3.00217
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.929684 19 217034 -0.697977 2.18638 4.52169 2.71733 -4.78684 5.81166
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_2df.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_2df.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_2df.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_2df.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_A1A2 beta_SNP_A1A1 sebeta_SNP_A1A2 sebeta_SNP_A1A1 chi2_SNP_2df
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 615.049 1057.49 -539.487 1040.54 0.398925
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -850.365 1388.5 -665.404 1051.38 0.439923
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -239.797 1308.51 -246.735 1102.06 0.18546
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 782.576 1474.59 604.391 1064.24 0.455685
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 1180.53 1104.39 912.574 1003.85 2.07181
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_addA1 sebeta_SNP_addA1 chi2_SNP_A1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 20.3848 76.6301 0.0723401
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -23.1819 86.1936 0.0739451
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -40.7723 102.559 0.161525
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 35.361 81.7867 0.191032
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -112.234 141.168 0.645143
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_2df.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_allcov_2df.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_2df.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_2df.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_A1A2 beta_SNP_A1A1 sebeta_SNP_A1A2 sebeta_SNP_A1A1 chi2_SNP_2df
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -42.5369 358.019 10.6268 0.971785 -0.0553902 0.0341818 615.049 1057.49 -539.487 1040.54 0.398925
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 869.272 1116.02 10.5913 0.971224 -0.0570178 0.034404 -850.365 1388.5 -665.404 1051.38 0.439923
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 411.658 1129.11 10.6102 0.97142 -0.0561054 0.0345134 -239.797 1308.51 -246.735 1102.06 0.18546
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 -466.058 1151.98 10.5899 0.97628 -0.0551387 0.0341616 782.576 1474.59 604.391 1064.24 0.455685
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -771.097 1010.55 10.5495 0.966378 -0.0523411 0.0340458 1180.53 1104.39 912.574 1003.85 2.07181
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_allcov_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_addA1 sebeta_SNP_addA1 chi2_SNP_A1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 157.241 51.1787 10.5939 0.968172 -0.0545043 0.0340802 20.3848 76.6301 0.0723401
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 208.37 139.538 10.5807 0.969304 -0.0553744 0.0342316 -23.1819 86.1936 0.0739451
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 241.55 177.862 10.6088 0.96871 -0.0554548 0.0341548 -40.7723 102.559 0.161525
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 114.868 129.487 10.6286 0.97127 -0.0550184 0.0340895 35.361 81.7867 0.191032
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 380.385 263.568 10.5956 0.966652 -0.0546486 0.0340271 -112.234 141.168 0.645143
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_allcov_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_domA1 sebeta_SNP_domA1 chi2_SNP_domA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 152.465 64.1551 10.5945 0.968147 -0.0545205 0.0340791 33.0595 115.333 0.0839917
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 333.208 400.996 10.5766 0.968798 -0.0560408 0.0342807 -168.464 416.06 0.167554
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 438.236 629.088 10.6099 0.968655 -0.0561868 0.0342976 -272.156 640.297 0.184631
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 -9.3568 345.394 10.6275 0.969826 -0.0551358 0.0340821 188.396 361.092 0.278116
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -112.928 894.62 10.5837 0.968571 -0.0540169 0.0341127 285.007 898.508 0.102848
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_over_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_allcov_over_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_over_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_over_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_odom sebeta_SNP_odom chi2_SNP_odom
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 135.239 102.774 10.597 0.968093 -0.0545831 0.0340762 80.0816 231.105 0.12273
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 163.508 43.9674 10.5851 0.969537 -0.0549639 0.0341929 23.7577 142.216 0.0285318
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 158.976 32.8501 10.6066 0.968692 -0.0550678 0.0341094 51.4168 142.042 0.133927
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 187.593 48.057 10.6255 0.972407 -0.0549024 0.034094 -50.7539 145.509 0.124354
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 147.361 21.5195 10.5843 0.965147 -0.0540917 0.0339747 188.854 172.317 1.22402
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_recess.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_allcov_recess.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_recess.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_allcov_recess.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_mu sebeta_mu beta_sex sebeta_sex beta_age sebeta_age beta_SNP_recA1 sebeta_SNP_recA1 chi2_SNP_recA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 165.164 25.4085 10.5929 0.968228 -0.0544795 0.0340824 51.0128 227.445 0.0514276
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 187.153 70.5515 10.5823 0.969404 -0.0552121 0.0342172 -24.8987 107.679 0.0546608
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 205.399 89.9388 10.608 0.968705 -0.055292 0.0341337 -45.9706 119.627 0.15093
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 144.307 65.8185 10.6279 0.971688 -0.0549782 0.0340913 42.3583 105.005 0.166307
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 299.206 136.609 10.5913 0.965972 -0.0544379 0.0340028 -147.318 156.768 0.900682
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_domA1 sebeta_SNP_domA1 chi2_SNP_domA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 33.0595 115.333 0.0839917
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -168.464 416.06 0.167554
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -272.156 640.297 0.184631
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 188.396 361.092 0.278116
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 285.007 898.508 0.102848
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_2df.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_int1_2df.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_2df.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_2df.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_A1A2 beta_SNP_A1A1 sebeta_SNP_A1A2 sebeta_SNP_A1A1 beta_SNP_A1A2_sex sebeta_SNP_A1A2_sex beta_SNP_A1A1_sex sebeta_SNP_A1A1_sex cov_SNP_A1A2_int_SNP_sex cov_SNP_A1A1_int_SNP_sex chi2_SNP_2df
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 1593.61 1396.37 -1682.67 1367.38 -2365.96 2136.16 2743.8 2104.57 -1.94885e+06 -1.86858e+06 2.74793
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -995.078 1945.8 -770.738 1454.67 294.383 2820.37 216.688 2138.91 -3.78347e+06 -2.11255e+06 0.451877
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -1923.83 1832.04 -1494.79 1543.08 3423.95 2587.01 2454.82 2175.63 -3.34152e+06 -2.36709e+06 4.86576
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 2522.19 1925.23 1838.42 1408.35 -4487.02 3055.37 -3151.68 2198.51 -3.73808e+06 -1.99888e+06 2.77251
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -1724.75 1444.25 -1221.51 1291.55 5640.85 2148.35 4175.65 1957.08 -2.08106e+06 -1.66428e+06 17.6341
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_int1_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_addA1 sebeta_SNP_addA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_A1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -45.7225 103.245 147.295 154.118 -10660.2 1.00915
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -27.6543 114.262 10.402 173.808 -12988.8 0.0776279
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 90.559 132.137 -325.583 207.815 -17420.5 2.66806
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 12.6388 117.256 44.4495 163.958 -13742 0.266589
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 236.082 190.688 -742.397 278.662 -36432.9 7.80078
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_int1_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_domA1 sebeta_SNP_domA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_domA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -61.9287 155.557 211.211 231.971 -24200.3 0.934442
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -187.209 539.073 46.4177 845.28 -288535 0.170655
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 165.826 848.164 -1013.37 1285.17 -713854 0.822827
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 202.574 527.457 -26.8027 725.023 -278061 0.279521
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -35.4736 1171.63 782.663 1830.27 -1.3717e+06 0.290776
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_over_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_int1_over_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_over_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_over_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_odom sebeta_SNP_odom beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_odom
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -81.087 312.59 356.508 464.941 -97725.4 0.72629
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 30.7386 192.34 -15.452 285.661 -36866.1 0.0315404
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -157.986 182.349 522.462 288.079 -33262.2 3.48497
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 22.4762 204.291 -149.27 291.664 -41733.3 0.393481
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -378.247 237.205 1133.19 335.631 -56374.3 12.5835
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_recess.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_int1_recess.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_recess.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_int1_recess.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_recA1 sebeta_SNP_recA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_recA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -161.759 305.734 476.204 457.394 -93476.4 1.16259
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -30.4797 143.782 12.7431 216.771 -20579.9 0.0582141
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 117.483 153.782 -407.155 242.571 -23621.9 3.02504
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 4.26371 149.483 75.5363 210.453 -22336.7 0.298723
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 301.25 213.625 -926.946 307.398 -45727.3 10.0183
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_over_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_over_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_over_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_over_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_odom sebeta_SNP_odom chi2_SNP_odom
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 80.0816 231.105 0.12273
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 23.7577 142.216 0.0285318
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 51.4168 142.042 0.133927
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 -50.7539 145.509 0.124354
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 188.854 172.317 1.22402
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_recess.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_recess.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_recess.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_recess.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_recA1 sebeta_SNP_recA1 chi2_SNP_recA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 51.0128 227.445 0.0514276
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -24.8987 107.679 0.0546608
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -45.9706 119.627 0.15093
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 42.3583 105.005 0.166307
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -147.318 156.768 0.900682
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_2df.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_2df.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_2df.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_2df.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_A1A2 beta_SNP_A1A1 sebeta_SNP_A1A2 sebeta_SNP_A1A1 chi2_SNP_2df
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 615.049 1090.02 -539.487 1081.61 0.398925
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -850.365 1283.94 -665.404 963.082 0.439923
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -239.797 1256.53 -246.735 1076.19 0.18546
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 782.576 1497.11 604.391 1082.59 0.455685
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 1180.53 1083.56 912.574 978.492 2.07181
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_addA1 sebeta_SNP_addA1 chi2_SNP_A1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 20.3848 70.8796 0.0723401
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -23.1819 69.3645 0.0739451
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -40.7723 115.229 0.161525
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 35.361 76.5006 0.191032
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -112.234 176.743 0.645143
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_domA1 sebeta_SNP_domA1 chi2_SNP_domA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 33.0595 106.46 0.0839917
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -168.464 330.31 0.167554
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -272.156 722.834 0.184631
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 188.396 341.884 0.278116
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 285.007 969.698 0.102848
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_2df.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_int1_2df.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_2df.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_2df.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_A1A2 beta_SNP_A1A1 sebeta_SNP_A1A2 sebeta_SNP_A1A1 beta_SNP_A1A2_sex sebeta_SNP_A1A2_sex beta_SNP_A1A1_sex sebeta_SNP_A1A1_sex cov_SNP_A1A2_int_SNP_sex cov_SNP_A1A1_int_SNP_sex chi2_SNP_2df
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 1593.61 1291.79 -1682.67 1252.15 -2365.96 2255.55 2743.8 2254.07 -1.64901e+06 -1.54337e+06 2.74793
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -995.078 1687.21 -770.738 1256.26 294.383 2589.28 216.688 1949.09 -2.84513e+06 -1.57831e+06 0.451877
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -1923.83 1756.02 -1494.79 1486.29 3423.95 2416.94 2454.82 2058.06 -3.09295e+06 -2.21373e+06 4.86576
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 2522.19 1901.77 1838.42 1381.85 -4487.02 3128.07 -3151.68 2242.75 -3.71516e+06 -1.95183e+06 2.77251
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -1724.75 1328.57 -1221.51 1206.74 5640.85 2036.68 4175.65 1874.48 -1.77693e+06 -1.46565e+06 17.6341
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_add.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_int1_add.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_add.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_add.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_addA1 sebeta_SNP_addA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_A1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -45.7225 83.4576 147.295 147.98 -6985.3 1.00915
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -27.6543 91.6186 10.402 140.083 -8416.31 0.0776279
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 90.559 122.281 -325.583 198.837 -14854.5 2.66806
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 12.6388 87.9358 44.4495 153.029 -7828.48 0.266589
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 236.082 207.303 -742.397 261.034 -42684.1 7.80078
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_int1_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_domA1 sebeta_SNP_domA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_domA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -61.9287 125.92 211.211 222.111 -15913.3 0.934442
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -187.209 428.199 46.4177 673.828 -184236 0.170655
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 165.826 831.538 -1013.37 1373.55 -686617 0.822827
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 202.574 400.967 -26.8027 672.286 -161032 0.279521
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -35.4736 1124.96 782.663 2085.43 -1.26573e+06 0.290776
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_over_domin.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_int1_over_domin.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_over_domin.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_over_domin.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_odom sebeta_SNP_odom beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_odom
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -81.087 254.946 356.508 442.401 -65352.1 0.72629
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 30.7386 156.71 -15.452 234.937 -24577.6 0.0315404
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 -157.986 166.163 522.462 266.977 -27445.4 3.48497
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 22.4762 155.321 -149.27 276.116 -24662.8 0.393481
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 -378.247 269.602 1133.19 313.667 -72204.8 12.5835
Copied: pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_recess.out.txt.save (from rev 1301, pkg/ProbABEL/examples/height_ngp2_robust_int1_recess.out.txt.save)
===================================================================
--- pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_recess.out.txt.save (rev 0)
+++ pkg/ProbABEL/checks/old_verified_results/height_ngp2_robust_int1_recess.out.txt.save 2013-08-25 18:55:47 UTC (rev 1308)
@@ -0,0 +1,6 @@
+name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_recA1 sebeta_SNP_recA1 beta_SNP_sex sebeta_SNP_sex cov_SNP_int_SNP_sex chi2_SNP_recA1
+rs7247199 G A 0.5847 0.415 0.9299 0.8666 182 0.333668 19 204938 -161.759 246.867 476.204 442.053 -61020.1 1.16259
+rs8102643 C T 0.5847 0.415 0.9308 0.8685 182 0.808189 19 207859 -30.4797 115.893 12.7431 175.88 -13457.5 0.0582141
+rs8102615 T A 0.5006 0.4702 0.9375 0.8932 182 0.8665 19 211970 117.483 141.241 -407.155 228.414 -19821 3.02504
+rs8105536 G A 0.5783 0.4213 0.9353 0.8832 182 0.7917 19 212033 4.26371 112.395 75.5363 197.292 -12833.7 0.298723
+rs2312724 T C 0.9122 0.0877 0.9841 0.9232 182 0.933465 19 217034 301.25 238.57 -926.946 284.787 -56521.5 10.0183
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/genabel -r 1308
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