[Genabel-commits] r1300 - in pkg/ProbABEL: doc examples tests

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2013-08-22 19:20:26 +0200 (Thu, 22 Aug 2013)
New Revision: 1300

Modified:
   pkg/ProbABEL/doc/packaging.txt
   pkg/ProbABEL/examples/Makefile.am
   pkg/ProbABEL/tests/Makefile.am
Log:
- Small updates to the ProbABEL packaging documentation
- In the examples and tests directories: make sure that the scripts are installed with executable permissions. 


Modified: pkg/ProbABEL/doc/packaging.txt
===================================================================
--- pkg/ProbABEL/doc/packaging.txt	2013-08-20 06:24:47 UTC (rev 1299)
+++ pkg/ProbABEL/doc/packaging.txt	2013-08-22 17:20:26 UTC (rev 1300)
@@ -21,20 +21,19 @@
    builds correctly for various settings of the ./configure
    options. Run the following:
     DISTCHECK_CONFIGURE_FLAGS="--disable-eigen" make distcheck
-    DISTCHECK_CONFIGURE_FLAGS="--enable-pacoxph" make distcheck
+    DISTCHECK_CONFIGURE_FLAGS="--disable-palinear" make distcheck
+    DISTCHECK_CONFIGURE_FLAGS="--disable-palogist" make distcheck
+    DISTCHECK_CONFIGURE_FLAGS="--disable-pacoxph" make distcheck
 ** Building the package for the first time
    Now that we verified that the source code builds without problems,
    let's create the package.
     mkdir /tmp/PA-deb
     cp probabel-0.3.0.tar.gz /tmp/PA-deb
     cd /tmp/PA-deb
-   Debian packages must have lowercase letters, so we'll have to rename
-   the directory after untar-ing it.
     tar -xzf probabel-0.3.0.tar.gz
     cd probabel-0.3.0
     dh_make --single --email youremail at example.com \
      --file ../probabel-0.3.0.tar.gz --copyright gpl2 \
-     --packagename probabel
 
    Hit the enter key to confirm the settings. Several files need to be
    edited.
@@ -43,7 +42,7 @@
    - debian/copyright
    - debian/README.Debian
    dh_make also creates several example scripts in the debian/
-   directory. We don't need them, so they can be delete:
+   directory. We don't need them, so they can be deleted:
     rm debian/*.ex debian/*.EX debian/README.source
    Now the package can be built (NOTE that dpkg-buildpackage replaces
    our default CXXFLAGS with "-g -O2"):

Modified: pkg/ProbABEL/examples/Makefile.am
===================================================================
--- pkg/ProbABEL/examples/Makefile.am	2013-08-20 06:24:47 UTC (rev 1299)
+++ pkg/ProbABEL/examples/Makefile.am	2013-08-22 17:20:26 UTC (rev 1300)
@@ -41,9 +41,6 @@
  impute_with_missing_add.out.txt.save					\
  height_ngp2_robust_domin.out.txt.save height.txt
 
-exampledir = $(pkgdatadir)/examples
-dist_example_DATA = $(examplefiles)
-
 TESTS_ENVIRONMENT = bash
 check_SCRIPTS =
 if BUILD_palinear
@@ -56,6 +53,10 @@
 check_SCRIPTS +=  example_cox.sh
 endif
 
+exampledir = $(pkgdatadir)/examples
+dist_example_DATA = $(examplefiles)
+dist_example_SCRIPTS = $(check_SCRIPTS) example_all.sh
+
 TESTS = $(check_SCRIPTS)
 
 cleanfiles_bt = logist_add.out.txt logist_fv_add.out.txt	\

Modified: pkg/ProbABEL/tests/Makefile.am
===================================================================
--- pkg/ProbABEL/tests/Makefile.am	2013-08-20 06:24:47 UTC (rev 1299)
+++ pkg/ProbABEL/tests/Makefile.am	2013-08-22 17:20:26 UTC (rev 1300)
@@ -35,9 +35,6 @@
 check_SCRIPTS =
 
 
-testsdir = $(pkgdatadir)/tests
-dist_tests_DATA = $(tests_files) $(verified_results)
-
 TESTS_ENVIRONMENT = bash
 if BUILD_palinear
 check_SCRIPTS += $(tests_files)
@@ -45,5 +42,10 @@
 
 TESTS = $(check_SCRIPTS)
 
+testsdir = $(pkgdatadir)/tests
+dist_tests_DATA = $(tests_files) $(verified_results)
+dist_tests_SCRIPTS = $(check_SCRIPTS)
+
+
 CLEANFILES = $(dose_files) $(prob_files) $(map_files) ${info_files} \
  ${output_files} ${other_files}