[Genabel-commits] r1288 - pkg/ProbABEL/doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2013-08-08 13:26:00 +0200 (Thu, 08 Aug 2013)
New Revision: 1288

Modified:
   pkg/ProbABEL/doc/ChangeLog
Log:
Updated Changelog to reflect the changes in the previous two commits. 

Copyright for this change lies with the Erasmus MC.



Modified: pkg/ProbABEL/doc/ChangeLog
===================================================================
--- pkg/ProbABEL/doc/ChangeLog	2013-08-08 11:23:24 UTC (rev 1287)
+++ pkg/ProbABEL/doc/ChangeLog	2013-08-08 11:26:00 UTC (rev 1288)
@@ -1,4 +1,6 @@
-***** v.0.4.0 (2013.06)
+***** v.0.4.0 (2013.08)
+* The output files now contain a chi^2 column with the chi^2 value based
+  on the LRT.
 * Fixed long-standing bug #1130: The Cox regression module of ProbABEL
   crashes (when using filevector files). Actually, the Cox PH module was
   broken ever since ProbABEL v0.1-9e. Thanks to the Erasmus Medical
@@ -6,13 +8,17 @@
   University Medical Center, Nijmegen (the group of prof. Kiemeney) for
   partially sponsoring the time spent on this fix. Also thanks to Ben
   Verhaaren and Anne Grotenhuis for testing!
+* Fixed bug #2575: ProbABEL chooses weird file names if the -o option is
+  not specified. As a result of this fix, usage of the -o option with
+  probabel.pl is slightly changed. Before the string specified after -o
+  was added to the name of the phenotype file. Now it indicated the
+  complete start of the file name (as before model-dependant strings like _2df
+  will be added automatically).
 * Fixed bug #2772: palogist with mmscore crashes (memory issue). Thanks to
   Anuj Goel for reporting this bug.
 * Fixed bug #4700: wrong order of betas and se_betas in header of 2df
   output files. Thanks to Anne Grotenhuis for reporting this bug and to
   Yurii Aulchenko for solving it.
-* Fixed bug #2575: ProbABEL chooses weird file names if the -o option is
-  not specified.
 * Fixed bug #4683: probabel.pl writes to the wrong directory if a relative
   path is given on the command line (Thanks to Aaron Isaacs for reporting
   this bug). NOTE: As a result of this fix giving the -o option to
@@ -24,6 +30,7 @@
 * Fixed bug #2529: ProbABEL doesn't warn when a required file is not
   specified on the command line
 
+
 ***** v.0.3.0 (2013.01.01)
 * This is a major rewrite of several important parts of the ProbABEL
   code. ProbABEL can now make use of the Eigen matrix library