[Genabel-commits] r1179 - in pkg/GenABEL: . R

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2013-04-03 17:05:14 +0200 (Wed, 03 Apr 2013)
New Revision: 1179

Modified:
   pkg/GenABEL/CHANGES.LOG
   pkg/GenABEL/R/ibs.R
Log:
patch to bug [#1287]

Modified: pkg/GenABEL/CHANGES.LOG
===================================================================
--- pkg/GenABEL/CHANGES.LOG	2013-04-03 15:00:43 UTC (rev 1178)
+++ pkg/GenABEL/CHANGES.LOG	2013-04-03 15:05:14 UTC (rev 1179)
@@ -1,7 +1,12 @@
 ***  v. 1.7-5
 
-(2013.04.03) Upgraded the version number to 1.7-5
+(2013.04.03) 
+Added patch to bug [#1287] - example(ibs) producing strange clusters.  
+Thanks to Vladimir Naumov for submitting the patch!
 
+(2013.04.03) 
+Upgraded the version number to 1.7-5
+
 (2013.04.02)
 Changed default behaviour of the export.plink() version. Export to .tped is now
 the default (because of the bugginess of the .ped export, see bug #2055.

Modified: pkg/GenABEL/R/ibs.R
===================================================================
--- pkg/GenABEL/R/ibs.R	2013-04-03 15:00:43 UTC (rev 1178)
+++ pkg/GenABEL/R/ibs.R	2013-04-03 15:05:14 UTC (rev 1179)
@@ -55,7 +55,7 @@
 #' 
 #' @examples 
 #' data(ge03d2c)
-#' set.seed(1)
+#' set.seed(7)
 #' # compute IBS based on a random sample of 1000 autosomal marker
 #' selectedSnps <- sample(autosomal(ge03d2c),1000,replace=FALSE)
 #' a <- ibs(ge03d2c,snps=selectedSnps)