[Genabel-commits] r972 - branches/ProbABEL-refactoring/ProbABEL/examples/test_other

[noreply at r-forge.r-project.org]

Author: maartenk
Date: 2012-10-05 23:46:18 +0200 (Fri, 05 Oct 2012)
New Revision: 972

Modified:
   branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_add.out.txt
   branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_fv_add.out.txt
   branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_add.out.txt
   branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_fv_add.out.txt
Log:
corrected mmscore results files of fix in invvarmatrix bug in svn commit 965

Modified: branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_add.out.txt
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_add.out.txt	2012-10-03 23:03:05 UTC (rev 971)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_add.out.txt	2012-10-05 21:46:18 UTC (rev 972)
@@ -1,6 +1,6 @@
 name,A1,A2,Freq1,MAF,Quality,Rsq,n,Mean_predictor_allele,beta_SNP_add,sebeta_SNP_add
-rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.72848,0.496506
-rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.24857,0.512741
-rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.49058,0.550687
-rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.00618,0.69671
-rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.29583,0.847414
+rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.85372,0.493678
+rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.14747,0.508844
+rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.52416,0.547479
+rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.05194,0.698126
+rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.2871,0.846442

Modified: branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_fv_add.out.txt
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_fv_add.out.txt	2012-10-03 23:03:05 UTC (rev 971)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_fv_add.out.txt	2012-10-05 21:46:18 UTC (rev 972)
@@ -1,6 +1,6 @@
 name,A1,A2,Freq1,MAF,Quality,Rsq,n,Mean_predictor_allele,beta_SNP_add,sebeta_SNP_add
-rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.72848,0.496506
-rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.24857,0.512741
-rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.49058,0.550687
-rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.00618,0.69671
-rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.29583,0.847414
+rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.85372,0.493678
+rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.14747,0.508844
+rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.52416,0.547479
+rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.05194,0.698126
+rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.2871,0.846442

Modified: branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_add.out.txt
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_add.out.txt	2012-10-03 23:03:05 UTC (rev 971)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_add.out.txt	2012-10-05 21:46:18 UTC (rev 972)
@@ -1,6 +1,6 @@
 name,A1,A2,Freq1,MAF,Quality,Rsq,n,Mean_predictor_allele,beta_SNP_addA1,sebeta_SNP_addA1,loglik
-rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.72848,0.496506,-1225.37
-rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.24857,0.512741,-1244.42
-rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.49058,0.550687,-1230.42
-rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.00618,0.69671,-1243.17
-rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.29583,0.847414,-1216.75
+rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.85372,0.493678,-1225.37
+rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.14747,0.508844,-1244.4
+rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.52416,0.547479,-1230.41
+rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.05194,0.698126,-1243.17
+rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.2871,0.846442,-1216.75

Modified: branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_fv_add.out.txt
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_fv_add.out.txt	2012-10-03 23:03:05 UTC (rev 971)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/test_other/mmscore_prob_fv_add.out.txt	2012-10-05 21:46:18 UTC (rev 972)
@@ -1,6 +1,6 @@
 name,A1,A2,Freq1,MAF,Quality,Rsq,n,Mean_predictor_allele,beta_SNP_addA1,sebeta_SNP_addA1,loglik
-rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.72848,0.496506,-1225.37
-rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.24857,0.512741,-1244.42
-rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.49058,0.550687,-1230.42
-rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.00618,0.69671,-1243.17
-rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.29583,0.847414,-1216.75
+rs735579,A,B,0.5847,0.5847,0.5847,0.5847,491,0.534623,1.85372,0.493678,-1225.37
+rs9088604,A,B,0.5847,0.5847,0.5847,0.5847,497,0.435614,-1.14747,0.508844,-1244.4
+rs1413801,A,B,0.5847,0.5847,0.5847,0.5847,492,0.311992,-1.52416,0.547479,-1230.41
+rs4911638,A,B,0.5847,0.5847,0.5847,0.5847,496,0.150202,1.05194,0.698126,-1243.17
+rs70099,A,B,0.5847,0.5847,0.5847,0.5847,493,0.0922921,-5.2871,0.846442,-1216.75