[Genabel-commits] r967 - pkg/ProbABEL/doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2012-10-03 23:41:24 +0200 (Wed, 03 Oct 2012)
New Revision: 967

Modified:
   pkg/ProbABEL/doc/ProbABEL_manual.tex
Log:
A few very small updates to the ProbABEL documentation.

Modified: pkg/ProbABEL/doc/ProbABEL_manual.tex
===================================================================
--- pkg/ProbABEL/doc/ProbABEL_manual.tex	2012-10-03 21:40:10 UTC (rev 966)
+++ pkg/ProbABEL/doc/ProbABEL_manual.tex	2012-10-03 21:41:24 UTC (rev 967)
@@ -318,11 +318,11 @@
 
 These options are
 \texttt{--dose} (or \texttt{-d}),
-specifying the genomic predictor/MLDOSE file described in sub-section \ref{ssec:dosein};
+specifying the genomic predictor/MLDOSE file described in section \ref{ssec:dosein};
 \texttt{--pheno} (or \texttt{-p}),
-specifying the phenotypic data file described in sub-section \ref{ssec:phenoin}; and
+specifying the phenotypic data file described in section \ref{ssec:phenoin}; and
 \texttt{--info} (or \texttt{-i}),
-specifying the SNP information file described in sub-section \ref{ssec:infoin}.
+specifying the SNP information file described in section \ref{ssec:infoin}.
 
 If you change to the \texttt{examples} directory you can run
 an analysis of height by running
@@ -381,7 +381,7 @@
 With the option \texttt{--mmscore} a score test for association
 between a trait and genetic polymorphisms in samples of related
 individuals is performed. For quantitative traits (\texttt{palinear})
-a file with the inverse of the variance-covarince matrix goes as input
+a file with the inverse of the variance-covariance matrix goes as input
 parameter with that option, e.g.~\texttt{--mmscore <filename>}. The
 file has to contain the first column with id names exactly like in
 phenotype file, BUT OMITTING people with no measured phenotype. The
@@ -824,7 +824,7 @@
 \end{quote}
 A proper reference may look like
 \begin{quote}
-For the analysis of imputed data, we used the \PA{}
+For the analysis of imputed data, we used the \PA{} v.0.2.0
 from the \texttt{GenABEL} suite of programs (Aulchenko \emph{et al.}, 2010).
 \end{quote}