[Genabel-commits] r924 - branches/ProbABEL-refactoring/ProbABEL/examples

[noreply at r-forge.r-project.org]

Author: maarten
Date: 2012-06-19 20:02:15 +0200 (Tue, 19 Jun 2012)
New Revision: 924

Added:
   branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old.sh
   branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old_short.sh
Log:
2 addhoc scripts to check current output from current output

Added: branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old.sh
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old.sh	                        (rev 0)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old.sh	2012-06-19 18:02:15 UTC (rev 924)
@@ -0,0 +1,64 @@
+echo height_base_add.out.txt && diff height_base_add.out.txt  test_other/height_base_add.out.txt
+echo height_base_fv_add.out.txt && diff height_base_fv_add.out.txt  test_other/height_base_fv_add.out.txt
+echo height_allcov_add.out.txt && diff height_allcov_add.out.txt  test_other/height_allcov_add.out.txt
+echo height_allcov_fv_add.out.txt && diff height_allcov_fv_add.out.txt  test_other/height_allcov_fv_add.out.txt
+echo height_int1_add.out.txt && diff height_int1_add.out.txt  test_other/height_int1_add.out.txt
+echo height_int1_fv_add.out.txt && diff height_int1_fv_add.out.txt  test_other/height_int1_fv_add.out.txt
+echo height_robust_add.out.txt && diff height_robust_add.out.txt  test_other/height_robust_add.out.txt
+echo height_robust_fv_add.out.txt && diff height_robust_fv_add.out.txt  test_other/height_robust_fv_add.out.txt
+echo height_robust_int1_add.out.txt && diff height_robust_int1_add.out.txt  test_other/height_robust_int1_add.out.txt
+echo height_robust_int1_fv_add.out.txt && diff height_robust_int1_fv_add.out.txt  test_other/height_robust_int1_fv_add.out.txt
+echo height_ngp2_add.out.txt && diff height_ngp2_add.out.txt  test_other/height_ngp2_add.out.txt
+echo height_ngp2_fv_add.out.txt && diff height_ngp2_fv_add.out.txt  test_other/height_ngp2_fv_add.out.txt
+echo height_ngp2_domin.out.txt && diff height_ngp2_domin.out.txt  test_other/height_ngp2_domin.out.txt
+echo height_ngp2_fv_domin.out.txt && diff height_ngp2_fv_domin.out.txt  test_other/height_ngp2_fv_domin.out.txt
+echo height_ngp2_over_domin.out.txt && diff height_ngp2_over_domin.out.txt  test_other/height_ngp2_over_domin.out.txt
+echo height_ngp2_fv_over_domin.out.txt && diff height_ngp2_fv_over_domin.out.txt  test_other/height_ngp2_fv_over_domin.out.txt
+echo height_ngp2_recess.out.txt && diff height_ngp2_recess.out.txt  test_other/height_ngp2_recess.out.txt
+echo height_ngp2_fv_recess.out.txt && diff height_ngp2_fv_recess.out.txt  test_other/height_ngp2_fv_recess.out.txt
+echo height_ngp2_2df.out.txt && diff height_ngp2_2df.out.txt  test_other/height_ngp2_2df.out.txt
+echo height_ngp2_fv_2df.out.txt && diff height_ngp2_fv_2df.out.txt  test_other/height_ngp2_fv_2df.out.txt
+echo height_ngp2_allcov_add.out.txt && diff height_ngp2_allcov_add.out.txt  test_other/height_ngp2_allcov_add.out.txt
+echo height_ngp2_allcov_fv_add.out.txt && diff height_ngp2_allcov_fv_add.out.txt  test_other/height_ngp2_allcov_fv_add.out.txt
+echo height_ngp2_allcov_domin.out.txt && diff height_ngp2_allcov_domin.out.txt  test_other/height_ngp2_allcov_domin.out.txt
+echo height_ngp2_allcov_fv_domin.out.txt && diff height_ngp2_allcov_fv_domin.out.txt  test_other/height_ngp2_allcov_fv_domin.out.txt
+echo height_ngp2_allcov_over_domin.out.txt && diff height_ngp2_allcov_over_domin.out.txt  test_other/height_ngp2_allcov_over_domin.out.txt
+echo height_ngp2_allcov_fv_over_domin.out.txt && diff height_ngp2_allcov_fv_over_domin.out.txt  test_other/height_ngp2_allcov_fv_over_domin.out.txt
+echo height_ngp2_allcov_recess.out.txt && diff height_ngp2_allcov_recess.out.txt  test_other/height_ngp2_allcov_recess.out.txt
+echo height_ngp2_allcov_fv_recess.out.txt && diff height_ngp2_allcov_fv_recess.out.txt  test_other/height_ngp2_allcov_fv_recess.out.txt
+echo height_ngp2_allcov_2df.out.txt && diff height_ngp2_allcov_2df.out.txt  test_other/height_ngp2_allcov_2df.out.txt
+echo height_ngp2_allcov_fv_2df.out.txt && diff height_ngp2_allcov_fv_2df.out.txt  test_other/height_ngp2_allcov_fv_2df.out.txt
+echo height_ngp2_int1_add.out.txt && diff height_ngp2_int1_add.out.txt  test_other/height_ngp2_int1_add.out.txt
+echo height_ngp2_int1_fv_add.out.txt && diff height_ngp2_int1_fv_add.out.txt  test_other/height_ngp2_int1_fv_add.out.txt
+echo height_ngp2_int1_domin.out.txt && diff height_ngp2_int1_domin.out.txt  test_other/height_ngp2_int1_domin.out.txt
+echo height_ngp2_int1_fv_domin.out.txt && diff height_ngp2_int1_fv_domin.out.txt  test_other/height_ngp2_int1_fv_domin.out.txt
+echo height_ngp2_int1_over_domin.out.txt && diff height_ngp2_int1_over_domin.out.txt  test_other/height_ngp2_int1_over_domin.out.txt
+echo height_ngp2_int1_fv_over_domin.out.txt && diff height_ngp2_int1_fv_over_domin.out.txt  test_other/height_ngp2_int1_fv_over_domin.out.txt
+echo height_ngp2_int1_recess.out.txt && diff height_ngp2_int1_recess.out.txt  test_other/height_ngp2_int1_recess.out.txt
+echo height_ngp2_int1_fv_recess.out.txt && diff height_ngp2_int1_fv_recess.out.txt  test_other/height_ngp2_int1_fv_recess.out.txt
+echo height_ngp2_int1_2df.out.txt && diff height_ngp2_int1_2df.out.txt  test_other/height_ngp2_int1_2df.out.txt
+echo height_ngp2_int1_fv_2df.out.txt && diff height_ngp2_int1_fv_2df.out.txt  test_other/height_ngp2_int1_fv_2df.out.txt
+echo height_ngp2_robust_add.out.txt && diff height_ngp2_robust_add.out.txt  test_other/height_ngp2_robust_add.out.txt
+echo height_ngp2_robust_fv_add.out.txt && diff height_ngp2_robust_fv_add.out.txt  test_other/height_ngp2_robust_fv_add.out.txt
+echo height_ngp2_robust_domin.out.txt && diff height_ngp2_robust_domin.out.txt  test_other/height_ngp2_robust_domin.out.txt
+echo height_ngp2_robust_fv_domin.out.txt && diff height_ngp2_robust_fv_domin.out.txt  test_other/height_ngp2_robust_fv_domin.out.txt
+echo height_ngp2_robust_over_domin.out.txt && diff height_ngp2_robust_over_domin.out.txt  test_other/height_ngp2_robust_over_domin.out.txt
+echo height_ngp2_robust_fv_over_domin.out.txt && diff height_ngp2_robust_fv_over_domin.out.txt  test_other/height_ngp2_robust_fv_over_domin.out.txt
+echo height_ngp2_robust_recess.out.txt && diff height_ngp2_robust_recess.out.txt  test_other/height_ngp2_robust_recess.out.txt
+echo height_ngp2_robust_fv_recess.out.txt && diff height_ngp2_robust_fv_recess.out.txt  test_other/height_ngp2_robust_fv_recess.out.txt
+echo height_ngp2_robust_2df.out.txt && diff height_ngp2_robust_2df.out.txt  test_other/height_ngp2_robust_2df.out.txt
+echo height_ngp2_robust_fv_2df.out.txt && diff height_ngp2_robust_fv_2df.out.txt  test_other/height_ngp2_robust_fv_2df.out.txt
+echo height_ngp2_robust_int1_add.out.txt && diff height_ngp2_robust_int1_add.out.txt  test_other/height_ngp2_robust_int1_add.out.txt
+echo height_ngp2_robust_int1_fv_add.out.txt && diff height_ngp2_robust_int1_fv_add.out.txt  test_other/height_ngp2_robust_int1_fv_add.out.txt
+echo height_ngp2_robust_int1_domin.out.txt && diff height_ngp2_robust_int1_domin.out.txt  test_other/height_ngp2_robust_int1_domin.out.txt
+echo height_ngp2_robust_int1_fv_domin.out.txt && diff height_ngp2_robust_int1_fv_domin.out.txt  test_other/height_ngp2_robust_int1_fv_domin.out.txt
+echo height_ngp2_robust_int1_over_domin.out.txt && diff height_ngp2_robust_int1_over_domin.out.txt  test_other/height_ngp2_robust_int1_over_domin.out.txt
+echo height_ngp2_robust_int1_fv_over_domin.out.txt && diff height_ngp2_robust_int1_fv_over_domin.out.txt  test_other/height_ngp2_robust_int1_fv_over_domin.out.txt
+echo height_ngp2_robust_int1_recess.out.txt && diff height_ngp2_robust_int1_recess.out.txt  test_other/height_ngp2_robust_int1_recess.out.txt
+echo height_ngp2_robust_int1_fv_recess.out.txt && diff height_ngp2_robust_int1_fv_recess.out.txt  test_other/height_ngp2_robust_int1_fv_recess.out.txt
+echo height_ngp2_robust_int1_2df.out.txt && diff height_ngp2_robust_int1_2df.out.txt  test_other/height_ngp2_robust_int1_2df.out.txt
+echo height_ngp2_robust_int1_fv_2df.out.txt && diff height_ngp2_robust_int1_fv_2df.out.txt  test_other/height_ngp2_robust_int1_fv_2df.out.txt
+echo mmscore_add.out.txt && diff mmscore_add.out.txt  test_other/mmscore_add.out.txt
+echo mmscore_fv_add.out.txt && diff mmscore_fv_add.out.txt test_other/mmscore_fv_add.out.txt
+echo mmscore_prob_add.out.txt && diff mmscore_prob_add.out.txt test_other/mmscore_prob_add.out.txt 
+echo mmscore_prob_fv_add.out.txt && diff mmscore_prob_fv_add.out.txt test_other/mmscore_prob_fv_add.out.txt

Added: branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old_short.sh
===================================================================
--- branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old_short.sh	                        (rev 0)
+++ branches/ProbABEL-refactoring/ProbABEL/examples/compare_with_old_short.sh	2012-06-19 18:02:15 UTC (rev 924)
@@ -0,0 +1,60 @@
+echo height_base_add.out.txt && diff height_base_add.out.txt  test_other/height_base_add.out.txt |wc -l
+echo height_base_fv_add.out.txt && diff height_base_fv_add.out.txt  test_other/height_base_fv_add.out.txt |wc -l
+echo height_allcov_add.out.txt && diff height_allcov_add.out.txt  test_other/height_allcov_add.out.txt |wc -l
+echo height_allcov_fv_add.out.txt && diff height_allcov_fv_add.out.txt  test_other/height_allcov_fv_add.out.txt |wc -l
+echo height_int1_add.out.txt && diff height_int1_add.out.txt  test_other/height_int1_add.out.txt |wc -l
+echo height_int1_fv_add.out.txt && diff height_int1_fv_add.out.txt  test_other/height_int1_fv_add.out.txt |wc -l
+echo height_robust_add.out.txt && diff height_robust_add.out.txt  test_other/height_robust_add.out.txt |wc -l
+echo height_robust_fv_add.out.txt && diff height_robust_fv_add.out.txt  test_other/height_robust_fv_add.out.txt |wc -l
+echo height_robust_int1_add.out.txt && diff height_robust_int1_add.out.txt  test_other/height_robust_int1_add.out.txt |wc -l
+echo height_robust_int1_fv_add.out.txt && diff height_robust_int1_fv_add.out.txt  test_other/height_robust_int1_fv_add.out.txt |wc -l
+echo height_ngp2_add.out.txt && diff height_ngp2_add.out.txt  test_other/height_ngp2_add.out.txt |wc -l
+echo height_ngp2_fv_add.out.txt && diff height_ngp2_fv_add.out.txt  test_other/height_ngp2_fv_add.out.txt |wc -l
+echo height_ngp2_domin.out.txt && diff height_ngp2_domin.out.txt  test_other/height_ngp2_domin.out.txt |wc -l
+echo height_ngp2_fv_domin.out.txt && diff height_ngp2_fv_domin.out.txt  test_other/height_ngp2_fv_domin.out.txt |wc -l
+echo height_ngp2_over_domin.out.txt && diff height_ngp2_over_domin.out.txt  test_other/height_ngp2_over_domin.out.txt |wc -l
+echo height_ngp2_fv_over_domin.out.txt && diff height_ngp2_fv_over_domin.out.txt  test_other/height_ngp2_fv_over_domin.out.txt |wc -l
+echo height_ngp2_recess.out.txt && diff height_ngp2_recess.out.txt  test_other/height_ngp2_recess.out.txt |wc -l
+echo height_ngp2_fv_recess.out.txt && diff height_ngp2_fv_recess.out.txt  test_other/height_ngp2_fv_recess.out.txt |wc -l
+echo height_ngp2_2df.out.txt && diff height_ngp2_2df.out.txt  test_other/height_ngp2_2df.out.txt |wc -l
+echo height_ngp2_fv_2df.out.txt && diff height_ngp2_fv_2df.out.txt  test_other/height_ngp2_fv_2df.out.txt |wc -l
+echo height_ngp2_allcov_add.out.txt && diff height_ngp2_allcov_add.out.txt  test_other/height_ngp2_allcov_add.out.txt |wc -l
+echo height_ngp2_allcov_fv_add.out.txt && diff height_ngp2_allcov_fv_add.out.txt  test_other/height_ngp2_allcov_fv_add.out.txt |wc -l
+echo height_ngp2_allcov_domin.out.txt && diff height_ngp2_allcov_domin.out.txt  test_other/height_ngp2_allcov_domin.out.txt |wc -l
+echo height_ngp2_allcov_fv_domin.out.txt && diff height_ngp2_allcov_fv_domin.out.txt  test_other/height_ngp2_allcov_fv_domin.out.txt |wc -l
+echo height_ngp2_allcov_over_domin.out.txt && diff height_ngp2_allcov_over_domin.out.txt  test_other/height_ngp2_allcov_over_domin.out.txt |wc -l
+echo height_ngp2_allcov_fv_over_domin.out.txt && diff height_ngp2_allcov_fv_over_domin.out.txt  test_other/height_ngp2_allcov_fv_over_domin.out.txt |wc -l
+echo height_ngp2_allcov_recess.out.txt && diff height_ngp2_allcov_recess.out.txt  test_other/height_ngp2_allcov_recess.out.txt |wc -l
+echo height_ngp2_allcov_fv_recess.out.txt && diff height_ngp2_allcov_fv_recess.out.txt  test_other/height_ngp2_allcov_fv_recess.out.txt |wc -l
+echo height_ngp2_allcov_2df.out.txt && diff height_ngp2_allcov_2df.out.txt  test_other/height_ngp2_allcov_2df.out.txt |wc -l
+echo height_ngp2_allcov_fv_2df.out.txt && diff height_ngp2_allcov_fv_2df.out.txt  test_other/height_ngp2_allcov_fv_2df.out.txt |wc -l
+echo height_ngp2_int1_add.out.txt && diff height_ngp2_int1_add.out.txt  test_other/height_ngp2_int1_add.out.txt |wc -l
+echo height_ngp2_int1_fv_add.out.txt && diff height_ngp2_int1_fv_add.out.txt  test_other/height_ngp2_int1_fv_add.out.txt |wc -l
+echo height_ngp2_int1_domin.out.txt && diff height_ngp2_int1_domin.out.txt  test_other/height_ngp2_int1_domin.out.txt |wc -l
+echo height_ngp2_int1_fv_domin.out.txt && diff height_ngp2_int1_fv_domin.out.txt  test_other/height_ngp2_int1_fv_domin.out.txt |wc -l
+echo height_ngp2_int1_over_domin.out.txt && diff height_ngp2_int1_over_domin.out.txt  test_other/height_ngp2_int1_over_domin.out.txt |wc -l
+echo height_ngp2_int1_fv_over_domin.out.txt && diff height_ngp2_int1_fv_over_domin.out.txt  test_other/height_ngp2_int1_fv_over_domin.out.txt |wc -l
+echo height_ngp2_int1_recess.out.txt && diff height_ngp2_int1_recess.out.txt  test_other/height_ngp2_int1_recess.out.txt |wc -l
+echo height_ngp2_int1_fv_recess.out.txt && diff height_ngp2_int1_fv_recess.out.txt  test_other/height_ngp2_int1_fv_recess.out.txt |wc -l
+echo height_ngp2_int1_2df.out.txt && diff height_ngp2_int1_2df.out.txt  test_other/height_ngp2_int1_2df.out.txt |wc -l
+echo height_ngp2_int1_fv_2df.out.txt && diff height_ngp2_int1_fv_2df.out.txt  test_other/height_ngp2_int1_fv_2df.out.txt |wc -l
+echo height_ngp2_robust_add.out.txt && diff height_ngp2_robust_add.out.txt  test_other/height_ngp2_robust_add.out.txt |wc -l
+echo height_ngp2_robust_fv_add.out.txt && diff height_ngp2_robust_fv_add.out.txt  test_other/height_ngp2_robust_fv_add.out.txt |wc -l
+echo height_ngp2_robust_domin.out.txt && diff height_ngp2_robust_domin.out.txt  test_other/height_ngp2_robust_domin.out.txt |wc -l
+echo height_ngp2_robust_fv_domin.out.txt && diff height_ngp2_robust_fv_domin.out.txt  test_other/height_ngp2_robust_fv_domin.out.txt |wc -l
+echo height_ngp2_robust_over_domin.out.txt && diff height_ngp2_robust_over_domin.out.txt  test_other/height_ngp2_robust_over_domin.out.txt |wc -l
+echo height_ngp2_robust_fv_over_domin.out.txt && diff height_ngp2_robust_fv_over_domin.out.txt  test_other/height_ngp2_robust_fv_over_domin.out.txt |wc -l
+echo height_ngp2_robust_recess.out.txt && diff height_ngp2_robust_recess.out.txt  test_other/height_ngp2_robust_recess.out.txt |wc -l
+echo height_ngp2_robust_fv_recess.out.txt && diff height_ngp2_robust_fv_recess.out.txt  test_other/height_ngp2_robust_fv_recess.out.txt |wc -l
+echo height_ngp2_robust_2df.out.txt && diff height_ngp2_robust_2df.out.txt  test_other/height_ngp2_robust_2df.out.txt |wc -l
+echo height_ngp2_robust_fv_2df.out.txt && diff height_ngp2_robust_fv_2df.out.txt  test_other/height_ngp2_robust_fv_2df.out.txt |wc -l
+echo height_ngp2_robust_int1_add.out.txt && diff height_ngp2_robust_int1_add.out.txt  test_other/height_ngp2_robust_int1_add.out.txt |wc -l
+echo height_ngp2_robust_int1_fv_add.out.txt && diff height_ngp2_robust_int1_fv_add.out.txt  test_other/height_ngp2_robust_int1_fv_add.out.txt |wc -l
+echo height_ngp2_robust_int1_domin.out.txt && diff height_ngp2_robust_int1_domin.out.txt  test_other/height_ngp2_robust_int1_domin.out.txt |wc -l
+echo height_ngp2_robust_int1_fv_domin.out.txt && diff height_ngp2_robust_int1_fv_domin.out.txt  test_other/height_ngp2_robust_int1_fv_domin.out.txt |wc -l
+echo height_ngp2_robust_int1_over_domin.out.txt && diff height_ngp2_robust_int1_over_domin.out.txt  test_other/height_ngp2_robust_int1_over_domin.out.txt |wc -l
+echo height_ngp2_robust_int1_fv_over_domin.out.txt && diff height_ngp2_robust_int1_fv_over_domin.out.txt  test_other/height_ngp2_robust_int1_fv_over_domin.out.txt |wc -l
+echo height_ngp2_robust_int1_recess.out.txt && diff height_ngp2_robust_int1_recess.out.txt  test_other/height_ngp2_robust_int1_recess.out.txt |wc -l
+echo height_ngp2_robust_int1_fv_recess.out.txt && diff height_ngp2_robust_int1_fv_recess.out.txt  test_other/height_ngp2_robust_int1_fv_recess.out.txt |wc -l
+echo height_ngp2_robust_int1_2df.out.txt && diff height_ngp2_robust_int1_2df.out.txt  test_other/height_ngp2_robust_int1_2df.out.txt |wc -l
+echo height_ngp2_robust_int1_fv_2df.out.txt && diff height_ngp2_robust_int1_fv_2df.out.txt  test_other/height_ngp2_robust_int1_fv_2df.out.txt |wc -l
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