[Genabel-commits] r1060 - in pkg/ProbABEL: . doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2012-12-21 20:22:46 +0100 (Fri, 21 Dec 2012)
New Revision: 1060

Modified:
   pkg/ProbABEL/configure.ac
   pkg/ProbABEL/doc/ChangeLog
Log:
Preparing for ProbABEL release 0.3.0:
	- configure.ac: bumped version number
	- doc/ChangeLog: add changelog entries for v0.3.0


Modified: pkg/ProbABEL/configure.ac
===================================================================
--- pkg/ProbABEL/configure.ac	2012-12-19 10:55:08 UTC (rev 1059)
+++ pkg/ProbABEL/configure.ac	2012-12-21 19:22:46 UTC (rev 1060)
@@ -2,8 +2,8 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ([2.67])
-AC_INIT(ProbABEL, 0.2.2, genabel-devel at r-forge.wu-wien.ac.at)
-AM_INIT_AUTOMAKE(ProbABEL, 0.2.2)
+AC_INIT(ProbABEL, 0.3.0-beta2, genabel-devel at r-forge.wu-wien.ac.at)
+AM_INIT_AUTOMAKE(ProbABEL, 0.3.0-beta2)
 AC_CONFIG_SRCDIR([src/data.h])
 AC_CONFIG_HEADERS([src/config.h])
 

Modified: pkg/ProbABEL/doc/ChangeLog
===================================================================
--- pkg/ProbABEL/doc/ChangeLog	2012-12-19 10:55:08 UTC (rev 1059)
+++ pkg/ProbABEL/doc/ChangeLog	2012-12-21 19:22:46 UTC (rev 1060)
@@ -1,3 +1,18 @@
+***** v.0.3.0 (2012)
+* This is a major rewrite of several important parts of the ProbABEL
+  code. ProbABEL can now make use of the Eigen matrix library
+  (http://eigen.tuxfamily.org) for matrix operations. Especially when
+  using the mmscore option this makes ProbABEL run ~ 5 times faster.
+  Unfortunately the CoxPH module is still broken.
+  This version completes several months of work by Maarten Kooyman who
+  took up this challenge. Thanks to Maarten!
+* Fixed bug #2436: probabel.pl doesn't overwrite output file (as it used
+  to do before 0.2.2). This bug was introduced with the possibility of
+  using SNP dosages/probabilities that are split into (sub-chromosomal)
+  chunks.
+* Fixed a small bug (without ID) where the column/row addressing of
+  matrices as incorrectly checked (off-by-one error) (svn rev.1056).
+
 ***** v.0.2.2 (2012.11.05)
 * No change in the code compared to v.0.2.1. Due to a mistake with the
   Ubuntu packaging (which was based on SVN r997, which contained a