[Genabel-commits] r730 - in pkg/ProbABEL: . doc

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2011-05-23 17:25:55 +0200 (Mon, 23 May 2011)
New Revision: 730

Added:
   pkg/ProbABEL/doc/Makefile
Modified:
   pkg/ProbABEL/Makefile
Log:
Added Makefile for the LaTeX documentation of ProbABEL and use this from the main ProbABEL Makefile.



Modified: pkg/ProbABEL/Makefile
===================================================================
--- pkg/ProbABEL/Makefile	2011-05-21 12:16:39 UTC (rev 729)
+++ pkg/ProbABEL/Makefile	2011-05-23 15:25:55 UTC (rev 730)
@@ -15,7 +15,7 @@
 CPP = g++
 CFLAGS = -I $(SRCDIR)/include -O2
 
-all: $(EXECUTABLES)
+all: $(EXECUTABLES) doc
 	cp $(SRCDIR)/extIDS.pl $(BINDIR)/.
 	cp $(SRCDIR)/prepare_data.R $(BINDIR)/.
 	cp $(SRCDIR)/probabel.pl $(BINDIR)/probabel.pl_example
@@ -30,12 +30,15 @@
 $(COXREG): $(COXSRC) $(REGFILES)
 	$(CPP) $(CFLAGS) -DCOXPH $(COXSRC) $(SRCDIR)/main.cpp $(SRCDIR)/fvlib/*.cpp -o $(COXREG)
 
+doc:
+	$(MAKE) -C $(DOCDIR)/
+
 clean: clean_doc
 	rm -f $(BINDIR)/* $(SRCDIR)/*~ $(SRCDIR)/*.o *.zip *.tar.gz examples/*.out.txt examples/*out
+	$(MAKE) clean -C $(DOCDIR)/
 
 clean_doc:
-	rm -f $(DOCDIR)/*~ $(DOCDIR)/*.log $(DOCDIR)/*.idx $(DOCDIR)/*.out $(DOCDIR)/*.toc $(DOCDIR)/*.aux
-	rm -rf $(DOCDIR)/auto
+	$(MAKE) clean_doc -C $(DOCDIR)/
 
 linux_distrib: clean
 	cd .. ; tar -czvf ProbABEL_$(VERSION).tar.gz ProbABEL
@@ -45,4 +48,4 @@
 
 distrib: linux_distrib clean win_distrib clean
 
-.PHONY:	distrib linux_distrib win_distrib clean clean_doc
+.PHONY:	distrib linux_distrib win_distrib clean clean_doc doc

Added: pkg/ProbABEL/doc/Makefile
===================================================================
--- pkg/ProbABEL/doc/Makefile	                        (rev 0)
+++ pkg/ProbABEL/doc/Makefile	2011-05-23 15:25:55 UTC (rev 730)
@@ -0,0 +1,45 @@
+MANNAME = ProbABEL_manual
+MANTEXSRC = $(MANNAME).tex
+MANAUX = $(patsubst %.tex, %.aux, $(MANTEXSRC))
+MANPDF =  $(patsubst %.tex, %.pdf, $(MANTEXSRC))
+
+.PHONY:	clean clean_doc
+
+$(MANPDF): $(MANTEXSRC) $(MANAUX)
+	@echo === Making final PDF ===
+	pdflatex $(MANTEXSRC)
+	@while ( grep "Rerun to " 			\
+		$(MANNAME).log > /dev/null ); do		\
+		echo '** Re-running LaTeX **';		\
+		pdflatex $(MANTEXSRC);		\
+	done
+	pdflatex $(MANTEXSRC)
+
+
+# A target needed to keep track of the nr. of LaTeX runs
+.btmp:
+
+
+clean_doc:
+	rm -f *~ *.log *.idx *.out *.toc *.aux
+	rm -rf auto
+
+clean: clean_doc
+	rm -f $(MANPDF)
+	rm -f .btmp
+
+%.aux:	%.tex $(MANSRC)
+	@echo === Making $< file ===
+	pdflatex $(MANTEXSRC)
+# Look for citations. Make sure grep never returns an error code.
+	@grep "^\\\\citation" $(MANAUX) > .btmp.new || true
+# If the citations are not changed, don't do anything. Otherwise replace
+# the .btmp file to make sure Bibtex will be run.
+	@if ( diff .btmp.new .btmp  > /dev/null ); then \
+		rm .btmp.new; \
+	else \
+		mv .btmp.new .btmp; \
+	fi
+
+# $(DOCS): $()
+# 	cd $(DOCDIR); pdflatex $(DOCSRC)