[Genabel-commits] r745 - branches/ProbABEL/autotools-integration/ProbABEL/src
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jun 28 15:29:27 CEST 2011
Author: lckarssen
Date: 2011-06-28 15:29:27 +0200 (Tue, 28 Jun 2011)
New Revision: 745
Removed:
branches/ProbABEL/autotools-integration/ProbABEL/src/tags
Modified:
branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.am
branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.in
branches/ProbABEL/autotools-integration/ProbABEL/src/coxfit2.c
branches/ProbABEL/autotools-integration/ProbABEL/src/reg1.h
Log:
In the ProbABEL autotools integration branch: This is the first commit where the
autotools approach builds all binaries! The problem of pacoxph not
compiling is solved. The problem was the fact that pacoxph mixes C and
C++, and the linker didn't like that. By adding
extern "C" {
#include "survproto.h"
}
to reg1.h this header file is now recognised as C and inclusion of the
coxfit2() function declaration in reg1.h is no longer necessary.
- src/coxfit2.c: I had to remove some old C++ debug print statements
to make it a pure C file again.
- src/Makefile.am: Added necessary R headers
- Removed an old tags file that was lying around for a long time. This
shouldn't end up in SVN, but be regenerated by each programmer.
The following now are tested and work:
- ./configure (with e.g. --prefix= options); make; make install
- make distclean
- make distcheck
- make dist-zip
So I guess all default stuff now works.
Generating the PDF documentation from the .tex file. Since most
developers won't have a complete LaTeX install, I don't think this is
really a problem. Now, before running ./configure running
cd doc && make && make clean_doc && cd ..
is required.
Modified: branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.am
===================================================================
--- branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.am 2011-06-28 12:47:24 UTC (rev 744)
+++ branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.am 2011-06-28 13:29:27 UTC (rev 745)
@@ -1,7 +1,3 @@
-AM_CXXFLAGS = -I include -O2
-AM_CFLAGS = -I include -O2
-AM_LDFLAGS =
-
## Using wildcards in these lists doesn't work. Also GNU make's ($wildcard,) doesn't
## work. It gives warning message about portability, but in the end doesn't work,
## I tried :-).
@@ -18,12 +14,20 @@
fvlib/ReusableFileHandle.h fvlib/RealHandlerWrapper.h \
fvlib/FilteredMatrix.h
+## R headers, used by pacoxph
+RHEADERS = include/R.h include/Rmath.h include/R_ext/Arith.h \
+ include/R_ext/Boolean.h include/Rconfig.h include/R_ext/Complex.h \
+ include/R_ext/Constants.h include/R_ext/Error.h \
+ include/R_ext/libextern.h include/R_ext/Memory.h \
+ include/R_ext/Print.h include/R_ext/Random.h include/R_ext/Utils.h \
+ include/R_ext/RS.h
+
## Extra files for pacoxph
-COXBASE = chinv2 cholesky2 chsolve2 dmatrix
-COXSRC = $(COXBASE:=.c) coxfit2.c
+COXBASE = coxfit2 chinv2 cholesky2 chsolve2 dmatrix
+COXSRC = $(COXBASE:=.c)
-bin_PROGRAMS = palinear palogist
+bin_PROGRAMS = palinear palogist pacoxph
#bin_PROGRAMS = pacoxph
palinear_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
@@ -32,23 +36,13 @@
palogist_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
palogist_CXXFLAGS = -DLOGISTIC
-# pacoxph_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS) $(COXSRC)
-# pacoxph_CXXFLAGS = -DCOXPH -I include
-# pacoxph_CFLAGS = -DCOXPH -I include
+pacoxph_SOURCES = $(COXSRC) $(REGFILES) $(FVSRC) $(FVHEADERS) \
+ $(RHEADERS) survS.h survproto.h
+pacoxph_CXXFLAGS = -DCOXPH -I $(top_srcdir)/src/include
+pacoxph_CFLAGS = -DCOXPH -I $(top_srcdir)/src/include
## Install these scripts in the bin directory as well:
dist_bin_SCRIPTS = probabel.pl extIDS.pl
## Install the config file
dist_sysconf_DATA = probabel_config.cfg
-
-
-## Old Makefile rules
-## palinear: $(REGFILES)
-## $(CXX) $(CXXFLAGS) -DLINEAR main.cpp $(FVSRC) -o $@
-
-## palogist: $(REGFILES)
-## $(CPP) $(CFLAGS) -DLOGISTIC main.cpp fvlib/*.cpp -o $(LOGREG)
-
-## pacoxph: $(COXSRC) $(REGFILES)
-## $(CPP) $(CFLAGS) -DCOXPH $(COXSRC) main.cpp fvlib/*.cpp -o $(COXREG)
Modified: branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.in
===================================================================
--- branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.in 2011-06-28 12:47:24 UTC (rev 744)
+++ branches/ProbABEL/autotools-integration/ProbABEL/src/Makefile.in 2011-06-28 13:29:27 UTC (rev 745)
@@ -34,7 +34,7 @@
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
-bin_PROGRAMS = pacoxph$(EXEEXT)
+bin_PROGRAMS = palinear$(EXEEXT) palogist$(EXEEXT) pacoxph$(EXEEXT)
subdir = src
DIST_COMMON = $(dist_bin_SCRIPTS) $(dist_sysconf_DATA) \
$(srcdir)/Makefile.am $(srcdir)/Makefile.in \
@@ -50,24 +50,55 @@
am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" \
"$(DESTDIR)$(sysconfdir)"
PROGRAMS = $(bin_PROGRAMS)
-am__objects_1 = pacoxph-main.$(OBJEXT)
-am__objects_2 = pacoxph-AbstractMatrix.$(OBJEXT) \
+am__objects_1 = pacoxph-coxfit2.$(OBJEXT) pacoxph-chinv2.$(OBJEXT) \
+ pacoxph-cholesky2.$(OBJEXT) pacoxph-chsolve2.$(OBJEXT) \
+ pacoxph-dmatrix.$(OBJEXT)
+am__objects_2 = $(am__objects_1)
+am__objects_3 = pacoxph-main.$(OBJEXT)
+am__objects_4 = pacoxph-AbstractMatrix.$(OBJEXT) \
pacoxph-CastUtils.$(OBJEXT) pacoxph-convert_util.$(OBJEXT) \
pacoxph-FileVector.$(OBJEXT) pacoxph-FilteredMatrix.$(OBJEXT) \
pacoxph-frutil.$(OBJEXT) pacoxph-Logger.$(OBJEXT) \
pacoxph-RealHandlerWrapper.$(OBJEXT) \
pacoxph-ReusableFileHandle.$(OBJEXT) \
pacoxph-Transposer.$(OBJEXT)
-am__objects_3 =
-am__objects_4 = pacoxph-chinv2.$(OBJEXT) pacoxph-cholesky2.$(OBJEXT) \
- pacoxph-chsolve2.$(OBJEXT) pacoxph-dmatrix.$(OBJEXT)
-am__objects_5 = $(am__objects_4) pacoxph-coxfit2.$(OBJEXT)
-am_pacoxph_OBJECTS = $(am__objects_1) $(am__objects_2) \
- $(am__objects_3) $(am__objects_5)
+am__objects_5 =
+am_pacoxph_OBJECTS = $(am__objects_2) $(am__objects_3) \
+ $(am__objects_4) $(am__objects_5) $(am__objects_5)
pacoxph_OBJECTS = $(am_pacoxph_OBJECTS)
pacoxph_LDADD = $(LDADD)
pacoxph_LINK = $(CXXLD) $(pacoxph_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) \
$(LDFLAGS) -o $@
+am__objects_6 = palinear-main.$(OBJEXT)
+am__objects_7 = palinear-AbstractMatrix.$(OBJEXT) \
+ palinear-CastUtils.$(OBJEXT) palinear-convert_util.$(OBJEXT) \
+ palinear-FileVector.$(OBJEXT) \
+ palinear-FilteredMatrix.$(OBJEXT) palinear-frutil.$(OBJEXT) \
+ palinear-Logger.$(OBJEXT) \
+ palinear-RealHandlerWrapper.$(OBJEXT) \
+ palinear-ReusableFileHandle.$(OBJEXT) \
+ palinear-Transposer.$(OBJEXT)
+am_palinear_OBJECTS = $(am__objects_6) $(am__objects_7) \
+ $(am__objects_5)
+palinear_OBJECTS = $(am_palinear_OBJECTS)
+palinear_LDADD = $(LDADD)
+palinear_LINK = $(CXXLD) $(palinear_CXXFLAGS) $(CXXFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
+am__objects_8 = palogist-main.$(OBJEXT)
+am__objects_9 = palogist-AbstractMatrix.$(OBJEXT) \
+ palogist-CastUtils.$(OBJEXT) palogist-convert_util.$(OBJEXT) \
+ palogist-FileVector.$(OBJEXT) \
+ palogist-FilteredMatrix.$(OBJEXT) palogist-frutil.$(OBJEXT) \
+ palogist-Logger.$(OBJEXT) \
+ palogist-RealHandlerWrapper.$(OBJEXT) \
+ palogist-ReusableFileHandle.$(OBJEXT) \
+ palogist-Transposer.$(OBJEXT)
+am_palogist_OBJECTS = $(am__objects_8) $(am__objects_9) \
+ $(am__objects_5)
+palogist_OBJECTS = $(am_palogist_OBJECTS)
+palogist_LDADD = $(LDADD)
+palogist_LINK = $(CXXLD) $(palogist_CXXFLAGS) $(CXXFLAGS) \
+ $(AM_LDFLAGS) $(LDFLAGS) -o $@
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
am__vpath_adj = case $$p in \
$(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
@@ -103,8 +134,9 @@
CXXLD = $(CXX)
CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
-o $@
-SOURCES = $(pacoxph_SOURCES)
-DIST_SOURCES = $(pacoxph_SOURCES)
+SOURCES = $(pacoxph_SOURCES) $(palinear_SOURCES) $(palogist_SOURCES)
+DIST_SOURCES = $(pacoxph_SOURCES) $(palinear_SOURCES) \
+ $(palogist_SOURCES)
DATA = $(dist_sysconf_DATA)
ETAGS = etags
CTAGS = ctags
@@ -201,9 +233,6 @@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
-AM_CXXFLAGS = -I include -O2
-AM_CFLAGS = -I include -O2
-AM_LDFLAGS =
REGFILES = data.h mematrix.h reg1.h usage.h main.cpp version.h mematri1.h
FVSRC = fvlib/AbstractMatrix.cpp fvlib/CastUtils.cpp \
fvlib/convert_util.cpp fvlib/FileVector.cpp fvlib/FilteredMatrix.cpp \
@@ -216,17 +245,25 @@
fvlib/ReusableFileHandle.h fvlib/RealHandlerWrapper.h \
fvlib/FilteredMatrix.h
-COXBASE = chinv2 cholesky2 chsolve2 dmatrix
-COXSRC = $(COXBASE:=.c) coxfit2.c
+RHEADERS = include/R.h include/Rmath.h include/R_ext/Arith.h \
+ include/R_ext/Boolean.h include/Rconfig.h include/R_ext/Complex.h \
+ include/R_ext/Constants.h include/R_ext/Error.h \
+ include/R_ext/libextern.h include/R_ext/Memory.h \
+ include/R_ext/Print.h include/R_ext/Random.h include/R_ext/Utils.h \
+ include/R_ext/RS.h
-# palinear_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
-# palinear_CXXFLAGS = -DLINEAR
+COXBASE = coxfit2 chinv2 cholesky2 chsolve2 dmatrix
+COXSRC = $(COXBASE:=.c)
+#bin_PROGRAMS = pacoxph
+palinear_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
+palinear_CXXFLAGS = -DLINEAR
+palogist_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
+palogist_CXXFLAGS = -DLOGISTIC
+pacoxph_SOURCES = $(COXSRC) $(REGFILES) $(FVSRC) $(FVHEADERS) \
+ $(RHEADERS) survS.h survproto.h
-# palogist_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS)
-# palogist_CXXFLAGS = -DLOGISTIC
-pacoxph_SOURCES = $(REGFILES) $(FVSRC) $(FVHEADERS) $(COXSRC)
-pacoxph_CXXFLAGS = -DCOXPH -I include
-pacoxph_CFLAGS = -DCOXPH -I include
+pacoxph_CXXFLAGS = -DCOXPH -I $(top_srcdir)/src/include
+pacoxph_CFLAGS = -DCOXPH -I $(top_srcdir)/src/include
dist_bin_SCRIPTS = probabel.pl extIDS.pl
dist_sysconf_DATA = probabel_config.cfg
all: config.h
@@ -321,6 +358,12 @@
pacoxph$(EXEEXT): $(pacoxph_OBJECTS) $(pacoxph_DEPENDENCIES)
@rm -f pacoxph$(EXEEXT)
$(pacoxph_LINK) $(pacoxph_OBJECTS) $(pacoxph_LDADD) $(LIBS)
+palinear$(EXEEXT): $(palinear_OBJECTS) $(palinear_DEPENDENCIES)
+ @rm -f palinear$(EXEEXT)
+ $(palinear_LINK) $(palinear_OBJECTS) $(palinear_LDADD) $(LIBS)
+palogist$(EXEEXT): $(palogist_OBJECTS) $(palogist_DEPENDENCIES)
+ @rm -f palogist$(EXEEXT)
+ $(palogist_LINK) $(palogist_OBJECTS) $(palogist_LDADD) $(LIBS)
install-dist_binSCRIPTS: $(dist_bin_SCRIPTS)
@$(NORMAL_INSTALL)
test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
@@ -378,6 +421,28 @@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/pacoxph-dmatrix.Po at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/pacoxph-frutil.Po at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/pacoxph-main.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-AbstractMatrix.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-CastUtils.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-FileVector.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-FilteredMatrix.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-Logger.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-RealHandlerWrapper.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-ReusableFileHandle.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-Transposer.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-convert_util.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-frutil.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palinear-main.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-AbstractMatrix.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-CastUtils.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-FileVector.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-FilteredMatrix.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-Logger.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-RealHandlerWrapper.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-ReusableFileHandle.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-Transposer.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-convert_util.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-frutil.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/palogist-main.Po at am__quote@
.c.o:
@am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@@ -393,6 +458,20 @@
@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'`
+pacoxph-coxfit2.o: coxfit2.c
+ at am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -MT pacoxph-coxfit2.o -MD -MP -MF $(DEPDIR)/pacoxph-coxfit2.Tpo -c -o pacoxph-coxfit2.o `test -f 'coxfit2.c' || echo '$(srcdir)/'`coxfit2.c
+ at am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/pacoxph-coxfit2.Tpo $(DEPDIR)/pacoxph-coxfit2.Po
+ at AMDEP_TRUE@@am__fastdepCC_FALSE@ source='coxfit2.c' object='pacoxph-coxfit2.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -c -o pacoxph-coxfit2.o `test -f 'coxfit2.c' || echo '$(srcdir)/'`coxfit2.c
+
+pacoxph-coxfit2.obj: coxfit2.c
+ at am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -MT pacoxph-coxfit2.obj -MD -MP -MF $(DEPDIR)/pacoxph-coxfit2.Tpo -c -o pacoxph-coxfit2.obj `if test -f 'coxfit2.c'; then $(CYGPATH_W) 'coxfit2.c'; else $(CYGPATH_W) '$(srcdir)/coxfit2.c'; fi`
+ at am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/pacoxph-coxfit2.Tpo $(DEPDIR)/pacoxph-coxfit2.Po
+ at AMDEP_TRUE@@am__fastdepCC_FALSE@ source='coxfit2.c' object='pacoxph-coxfit2.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -c -o pacoxph-coxfit2.obj `if test -f 'coxfit2.c'; then $(CYGPATH_W) 'coxfit2.c'; else $(CYGPATH_W) '$(srcdir)/coxfit2.c'; fi`
+
pacoxph-chinv2.o: chinv2.c
@am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -MT pacoxph-chinv2.o -MD -MP -MF $(DEPDIR)/pacoxph-chinv2.Tpo -c -o pacoxph-chinv2.o `test -f 'chinv2.c' || echo '$(srcdir)/'`chinv2.c
@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/pacoxph-chinv2.Tpo $(DEPDIR)/pacoxph-chinv2.Po
@@ -449,20 +528,6 @@
@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -c -o pacoxph-dmatrix.obj `if test -f 'dmatrix.c'; then $(CYGPATH_W) 'dmatrix.c'; else $(CYGPATH_W) '$(srcdir)/dmatrix.c'; fi`
-pacoxph-coxfit2.o: coxfit2.c
- at am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -MT pacoxph-coxfit2.o -MD -MP -MF $(DEPDIR)/pacoxph-coxfit2.Tpo -c -o pacoxph-coxfit2.o `test -f 'coxfit2.c' || echo '$(srcdir)/'`coxfit2.c
- at am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/pacoxph-coxfit2.Tpo $(DEPDIR)/pacoxph-coxfit2.Po
- at AMDEP_TRUE@@am__fastdepCC_FALSE@ source='coxfit2.c' object='pacoxph-coxfit2.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -c -o pacoxph-coxfit2.o `test -f 'coxfit2.c' || echo '$(srcdir)/'`coxfit2.c
-
-pacoxph-coxfit2.obj: coxfit2.c
- at am__fastdepCC_TRUE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -MT pacoxph-coxfit2.obj -MD -MP -MF $(DEPDIR)/pacoxph-coxfit2.Tpo -c -o pacoxph-coxfit2.obj `if test -f 'coxfit2.c'; then $(CYGPATH_W) 'coxfit2.c'; else $(CYGPATH_W) '$(srcdir)/coxfit2.c'; fi`
- at am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/pacoxph-coxfit2.Tpo $(DEPDIR)/pacoxph-coxfit2.Po
- at AMDEP_TRUE@@am__fastdepCC_FALSE@ source='coxfit2.c' object='pacoxph-coxfit2.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCC_FALSE@ $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CFLAGS) $(CFLAGS) -c -o pacoxph-coxfit2.obj `if test -f 'coxfit2.c'; then $(CYGPATH_W) 'coxfit2.c'; else $(CYGPATH_W) '$(srcdir)/coxfit2.c'; fi`
-
.cpp.o:
@am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@@ -630,6 +695,314 @@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/Transposer.cpp' object='pacoxph-Transposer.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(pacoxph_CXXFLAGS) $(CXXFLAGS) -c -o pacoxph-Transposer.obj `if test -f 'fvlib/Transposer.cpp'; then $(CYGPATH_W) 'fvlib/Transposer.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/Transposer.cpp'; fi`
+
+palinear-main.o: main.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-main.o -MD -MP -MF $(DEPDIR)/palinear-main.Tpo -c -o palinear-main.o `test -f 'main.cpp' || echo '$(srcdir)/'`main.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-main.Tpo $(DEPDIR)/palinear-main.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='main.cpp' object='palinear-main.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-main.o `test -f 'main.cpp' || echo '$(srcdir)/'`main.cpp
+
+palinear-main.obj: main.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-main.obj -MD -MP -MF $(DEPDIR)/palinear-main.Tpo -c -o palinear-main.obj `if test -f 'main.cpp'; then $(CYGPATH_W) 'main.cpp'; else $(CYGPATH_W) '$(srcdir)/main.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-main.Tpo $(DEPDIR)/palinear-main.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='main.cpp' object='palinear-main.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-main.obj `if test -f 'main.cpp'; then $(CYGPATH_W) 'main.cpp'; else $(CYGPATH_W) '$(srcdir)/main.cpp'; fi`
+
+palinear-AbstractMatrix.o: fvlib/AbstractMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-AbstractMatrix.o -MD -MP -MF $(DEPDIR)/palinear-AbstractMatrix.Tpo -c -o palinear-AbstractMatrix.o `test -f 'fvlib/AbstractMatrix.cpp' || echo '$(srcdir)/'`fvlib/AbstractMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-AbstractMatrix.Tpo $(DEPDIR)/palinear-AbstractMatrix.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/AbstractMatrix.cpp' object='palinear-AbstractMatrix.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-AbstractMatrix.o `test -f 'fvlib/AbstractMatrix.cpp' || echo '$(srcdir)/'`fvlib/AbstractMatrix.cpp
+
+palinear-AbstractMatrix.obj: fvlib/AbstractMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-AbstractMatrix.obj -MD -MP -MF $(DEPDIR)/palinear-AbstractMatrix.Tpo -c -o palinear-AbstractMatrix.obj `if test -f 'fvlib/AbstractMatrix.cpp'; then $(CYGPATH_W) 'fvlib/AbstractMatrix.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/AbstractMatrix.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-AbstractMatrix.Tpo $(DEPDIR)/palinear-AbstractMatrix.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/AbstractMatrix.cpp' object='palinear-AbstractMatrix.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-AbstractMatrix.obj `if test -f 'fvlib/AbstractMatrix.cpp'; then $(CYGPATH_W) 'fvlib/AbstractMatrix.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/AbstractMatrix.cpp'; fi`
+
+palinear-CastUtils.o: fvlib/CastUtils.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-CastUtils.o -MD -MP -MF $(DEPDIR)/palinear-CastUtils.Tpo -c -o palinear-CastUtils.o `test -f 'fvlib/CastUtils.cpp' || echo '$(srcdir)/'`fvlib/CastUtils.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-CastUtils.Tpo $(DEPDIR)/palinear-CastUtils.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/CastUtils.cpp' object='palinear-CastUtils.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-CastUtils.o `test -f 'fvlib/CastUtils.cpp' || echo '$(srcdir)/'`fvlib/CastUtils.cpp
+
+palinear-CastUtils.obj: fvlib/CastUtils.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-CastUtils.obj -MD -MP -MF $(DEPDIR)/palinear-CastUtils.Tpo -c -o palinear-CastUtils.obj `if test -f 'fvlib/CastUtils.cpp'; then $(CYGPATH_W) 'fvlib/CastUtils.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/CastUtils.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-CastUtils.Tpo $(DEPDIR)/palinear-CastUtils.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/CastUtils.cpp' object='palinear-CastUtils.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-CastUtils.obj `if test -f 'fvlib/CastUtils.cpp'; then $(CYGPATH_W) 'fvlib/CastUtils.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/CastUtils.cpp'; fi`
+
+palinear-convert_util.o: fvlib/convert_util.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-convert_util.o -MD -MP -MF $(DEPDIR)/palinear-convert_util.Tpo -c -o palinear-convert_util.o `test -f 'fvlib/convert_util.cpp' || echo '$(srcdir)/'`fvlib/convert_util.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-convert_util.Tpo $(DEPDIR)/palinear-convert_util.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/convert_util.cpp' object='palinear-convert_util.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-convert_util.o `test -f 'fvlib/convert_util.cpp' || echo '$(srcdir)/'`fvlib/convert_util.cpp
+
+palinear-convert_util.obj: fvlib/convert_util.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-convert_util.obj -MD -MP -MF $(DEPDIR)/palinear-convert_util.Tpo -c -o palinear-convert_util.obj `if test -f 'fvlib/convert_util.cpp'; then $(CYGPATH_W) 'fvlib/convert_util.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/convert_util.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-convert_util.Tpo $(DEPDIR)/palinear-convert_util.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/convert_util.cpp' object='palinear-convert_util.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-convert_util.obj `if test -f 'fvlib/convert_util.cpp'; then $(CYGPATH_W) 'fvlib/convert_util.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/convert_util.cpp'; fi`
+
+palinear-FileVector.o: fvlib/FileVector.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-FileVector.o -MD -MP -MF $(DEPDIR)/palinear-FileVector.Tpo -c -o palinear-FileVector.o `test -f 'fvlib/FileVector.cpp' || echo '$(srcdir)/'`fvlib/FileVector.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-FileVector.Tpo $(DEPDIR)/palinear-FileVector.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/FileVector.cpp' object='palinear-FileVector.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-FileVector.o `test -f 'fvlib/FileVector.cpp' || echo '$(srcdir)/'`fvlib/FileVector.cpp
+
+palinear-FileVector.obj: fvlib/FileVector.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-FileVector.obj -MD -MP -MF $(DEPDIR)/palinear-FileVector.Tpo -c -o palinear-FileVector.obj `if test -f 'fvlib/FileVector.cpp'; then $(CYGPATH_W) 'fvlib/FileVector.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/FileVector.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-FileVector.Tpo $(DEPDIR)/palinear-FileVector.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/FileVector.cpp' object='palinear-FileVector.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-FileVector.obj `if test -f 'fvlib/FileVector.cpp'; then $(CYGPATH_W) 'fvlib/FileVector.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/FileVector.cpp'; fi`
+
+palinear-FilteredMatrix.o: fvlib/FilteredMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-FilteredMatrix.o -MD -MP -MF $(DEPDIR)/palinear-FilteredMatrix.Tpo -c -o palinear-FilteredMatrix.o `test -f 'fvlib/FilteredMatrix.cpp' || echo '$(srcdir)/'`fvlib/FilteredMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-FilteredMatrix.Tpo $(DEPDIR)/palinear-FilteredMatrix.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/FilteredMatrix.cpp' object='palinear-FilteredMatrix.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-FilteredMatrix.o `test -f 'fvlib/FilteredMatrix.cpp' || echo '$(srcdir)/'`fvlib/FilteredMatrix.cpp
+
+palinear-FilteredMatrix.obj: fvlib/FilteredMatrix.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-FilteredMatrix.obj -MD -MP -MF $(DEPDIR)/palinear-FilteredMatrix.Tpo -c -o palinear-FilteredMatrix.obj `if test -f 'fvlib/FilteredMatrix.cpp'; then $(CYGPATH_W) 'fvlib/FilteredMatrix.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/FilteredMatrix.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-FilteredMatrix.Tpo $(DEPDIR)/palinear-FilteredMatrix.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/FilteredMatrix.cpp' object='palinear-FilteredMatrix.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-FilteredMatrix.obj `if test -f 'fvlib/FilteredMatrix.cpp'; then $(CYGPATH_W) 'fvlib/FilteredMatrix.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/FilteredMatrix.cpp'; fi`
+
+palinear-frutil.o: fvlib/frutil.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-frutil.o -MD -MP -MF $(DEPDIR)/palinear-frutil.Tpo -c -o palinear-frutil.o `test -f 'fvlib/frutil.cpp' || echo '$(srcdir)/'`fvlib/frutil.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-frutil.Tpo $(DEPDIR)/palinear-frutil.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/frutil.cpp' object='palinear-frutil.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-frutil.o `test -f 'fvlib/frutil.cpp' || echo '$(srcdir)/'`fvlib/frutil.cpp
+
+palinear-frutil.obj: fvlib/frutil.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-frutil.obj -MD -MP -MF $(DEPDIR)/palinear-frutil.Tpo -c -o palinear-frutil.obj `if test -f 'fvlib/frutil.cpp'; then $(CYGPATH_W) 'fvlib/frutil.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/frutil.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-frutil.Tpo $(DEPDIR)/palinear-frutil.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/frutil.cpp' object='palinear-frutil.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-frutil.obj `if test -f 'fvlib/frutil.cpp'; then $(CYGPATH_W) 'fvlib/frutil.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/frutil.cpp'; fi`
+
+palinear-Logger.o: fvlib/Logger.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-Logger.o -MD -MP -MF $(DEPDIR)/palinear-Logger.Tpo -c -o palinear-Logger.o `test -f 'fvlib/Logger.cpp' || echo '$(srcdir)/'`fvlib/Logger.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-Logger.Tpo $(DEPDIR)/palinear-Logger.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/Logger.cpp' object='palinear-Logger.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-Logger.o `test -f 'fvlib/Logger.cpp' || echo '$(srcdir)/'`fvlib/Logger.cpp
+
+palinear-Logger.obj: fvlib/Logger.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-Logger.obj -MD -MP -MF $(DEPDIR)/palinear-Logger.Tpo -c -o palinear-Logger.obj `if test -f 'fvlib/Logger.cpp'; then $(CYGPATH_W) 'fvlib/Logger.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/Logger.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-Logger.Tpo $(DEPDIR)/palinear-Logger.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/Logger.cpp' object='palinear-Logger.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-Logger.obj `if test -f 'fvlib/Logger.cpp'; then $(CYGPATH_W) 'fvlib/Logger.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/Logger.cpp'; fi`
+
+palinear-RealHandlerWrapper.o: fvlib/RealHandlerWrapper.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-RealHandlerWrapper.o -MD -MP -MF $(DEPDIR)/palinear-RealHandlerWrapper.Tpo -c -o palinear-RealHandlerWrapper.o `test -f 'fvlib/RealHandlerWrapper.cpp' || echo '$(srcdir)/'`fvlib/RealHandlerWrapper.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-RealHandlerWrapper.Tpo $(DEPDIR)/palinear-RealHandlerWrapper.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/RealHandlerWrapper.cpp' object='palinear-RealHandlerWrapper.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -c -o palinear-RealHandlerWrapper.o `test -f 'fvlib/RealHandlerWrapper.cpp' || echo '$(srcdir)/'`fvlib/RealHandlerWrapper.cpp
+
+palinear-RealHandlerWrapper.obj: fvlib/RealHandlerWrapper.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(palinear_CXXFLAGS) $(CXXFLAGS) -MT palinear-RealHandlerWrapper.obj -MD -MP -MF $(DEPDIR)/palinear-RealHandlerWrapper.Tpo -c -o palinear-RealHandlerWrapper.obj `if test -f 'fvlib/RealHandlerWrapper.cpp'; then $(CYGPATH_W) 'fvlib/RealHandlerWrapper.cpp'; else $(CYGPATH_W) '$(srcdir)/fvlib/RealHandlerWrapper.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/palinear-RealHandlerWrapper.Tpo $(DEPDIR)/palinear-RealHandlerWrapper.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='fvlib/RealHandlerWrapper.cpp' object='palinear-RealHandlerWrapper.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
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