[Genabel-commits] r755 - in pkg/ProbABEL: . src
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jul 26 18:52:59 CEST 2011
Author: lckarssen
Date: 2011-07-26 18:52:58 +0200 (Tue, 26 Jul 2011)
New Revision: 755
Added:
pkg/ProbABEL/Makefile.am
pkg/ProbABEL/Makefile.in
pkg/ProbABEL/aclocal.m4
pkg/ProbABEL/compile
pkg/ProbABEL/configure
pkg/ProbABEL/configure.ac
pkg/ProbABEL/depcomp
pkg/ProbABEL/install-sh
pkg/ProbABEL/missing
pkg/ProbABEL/src/Makefile.am
pkg/ProbABEL/src/Makefile.in
pkg/ProbABEL/src/config.h.in
Removed:
pkg/ProbABEL/Makefile
pkg/ProbABEL/src/tags
Modified:
pkg/ProbABEL/
pkg/ProbABEL/src/coxfit2.c
pkg/ProbABEL/src/reg1.h
Log:
Merged the ProbABEL autotools branch back into trunk. Now ProbABEL can
be compuled with the well-known commmands:
./configure
make
make install
See log messages in the branch for details on file changes.
One thing is still missing at this point is compile the PDF documentation
with automake. Therefore, before trying to run the commands mentioned
above first run:
cd doc
make
make doc_clean
cd ..
Note that before any commit is done from the ProbABEL directory any
leftovers of ./configure and make must be removed. The can be done
with the following commands:
cd doc
make clean
cd ..
make distclean
That's it!
Property changes on: pkg/ProbABEL
___________________________________________________________________
Modified: svn:ignore
- .project
+ .project
autom4te.cache
ProbABEL-0.1-9e.tar.gz
Deleted: pkg/ProbABEL/Makefile
===================================================================
--- pkg/ProbABEL/Makefile 2011-07-26 14:22:19 UTC (rev 754)
+++ pkg/ProbABEL/Makefile 2011-07-26 16:52:58 UTC (rev 755)
@@ -1,51 +0,0 @@
-VERSION = 0.1-9e
-SRCDIR = src
-BINDIR = bin
-DOCDIR = doc
-LINREG = $(BINDIR)/palinear
-LOGREG = $(BINDIR)/palogist
-COXREG = $(BINDIR)/pacoxph
-EXECUTABLES = $(LOGREG) $(LINREG) $(COXREG)
-
-REGFILES = $(SRCDIR)/data.h $(SRCDIR)/mematrix.h $(SRCDIR)/reg1.h $(SRCDIR)/usage.h $(SRCDIR)/main.cpp
-COXBASE = $(SRCDIR)/chinv2 $(SRCDIR)/cholesky2 $(SRCDIR)/chsolve2 $(SRCDIR)/dmatrix $(SRCDIR)/coxfit2
-COXSRC = $(COXBASE:=.c)
-COXOBJ = $(COXBASE:=.o)
-
-CPP = g++
-CFLAGS = -I $(SRCDIR)/include -O2
-
-all: $(EXECUTABLES) doc
- cp $(SRCDIR)/extIDS.pl $(BINDIR)/.
- cp $(SRCDIR)/prepare_data.R $(BINDIR)/.
- cp $(SRCDIR)/probabel.pl $(BINDIR)/probabel.pl_example
- cp $(SRCDIR)/probabel_config.cfg $(BINDIR)/probabel_config.cfg_example
-
-$(LINREG): $(REGFILES)
- $(CPP) $(CFLAGS) -DLINEAR $(SRCDIR)/main.cpp $(SRCDIR)/fvlib/*.cpp -o $(LINREG)
-
-$(LOGREG): $(REGFILES)
- $(CPP) $(CFLAGS) -DLOGISTIC $(SRCDIR)/main.cpp $(SRCDIR)/fvlib/*.cpp -o $(LOGREG)
-
-$(COXREG): $(COXSRC) $(REGFILES)
- $(CPP) $(CFLAGS) -DCOXPH $(COXSRC) $(SRCDIR)/main.cpp $(SRCDIR)/fvlib/*.cpp -o $(COXREG)
-
-doc:
- $(MAKE) -C $(DOCDIR)/
-
-clean: clean_doc
- rm -f $(BINDIR)/* $(SRCDIR)/*~ $(SRCDIR)/*.o *.zip *.tar.gz examples/*.out.txt examples/*out
- $(MAKE) clean -C $(DOCDIR)/
-
-clean_doc:
- $(MAKE) clean_doc -C $(DOCDIR)/
-
-linux_distrib: clean
- cd .. ; tar -czvf ProbABEL_$(VERSION).tar.gz ProbABEL
-
-win_distrib: all
- cd .. ; zip -r9 ProbABEL_$(VERSION)_win.zip ProbABEL
-
-distrib: linux_distrib clean win_distrib clean
-
-.PHONY: distrib linux_distrib win_distrib clean clean_doc doc
Copied: pkg/ProbABEL/Makefile.am (from rev 753, branches/ProbABEL/autotools-integration/ProbABEL/Makefile.am)
===================================================================
--- pkg/ProbABEL/Makefile.am (rev 0)
+++ pkg/ProbABEL/Makefile.am 2011-07-26 16:52:58 UTC (rev 755)
@@ -0,0 +1,66 @@
+AUTOMAKE_OPTIONS = foreign
+SUBDIRS = src
+
+docfiles = doc/ProbABEL_manual.pdf doc/ProbABEL_manual.tex \
+ doc/QuickStart.txt doc/short_coxph_data.txt doc/short_height.out.csv \
+ doc/short_height.txt doc/short_logist_data.txt doc/test_regression.R \
+ doc/COPYING doc/LICENSE doc/INSTALL doc/CHANGES.LOG doc/TODO
+examplefiles = \
+ examples/height_ngp2_robust_int1_over_domin.out.txt.save \
+ examples/test.prob.fvi examples/mmscore_gen.prob.fvd \
+ examples/test.map examples/mldose.IDS \
+ examples/impute_with_missing.mlinfo \
+ examples/height_ngp2_robust_int1_recess.out.txt.save \
+ examples/height_ngp2_2df.out.txt.save examples/mmscore_gen.mlprob \
+ examples/mmscore_gen.mlinfo \
+ examples/height_ngp2_robust_recess.out.txt.save \
+ examples/example_cox.sh examples/test.mlprob examples/test.prob.fvd \
+ examples/impute_with_missing_robust_int1_add.out.txt.save \
+ examples/test.mlinfo examples/regression_add.out.txt.save \
+ examples/height_ngp2_robust_add.out.txt.save \
+ examples/mmscore_gen.dose.fvi \
+ examples/impute_with_missing_allcov_add.out.txt.save \
+ examples/example_bt.sh examples/height_ngp2_int1_recess.out.txt.save \
+ examples/example_qt.sh examples/coxph_data.txt \
+ examples/height_ngp2_robust_int1_domin.out.txt.save \
+ examples/height_ngp2_allcov_2df.out.txt.save \
+ examples/impute_with_missing_int1_add.out.txt.save \
+ examples/mmscore_gen.mldose examples/example_mms.sh \
+ examples/height_ngp2_recess.out.txt.save \
+ examples/height_ngp2_over_domin.out.txt.save \
+ examples/height_ngp2_int1_domin.out.txt.save \
+ examples/height_ngp2_allcov_domin.out.txt.save \
+ examples/height_ngp2_robust_over_domin.out.txt.save \
+ examples/height_ngp2_robust_int1_add.out.txt.save \
+ examples/height_int1_add.out.txt.save \
+ examples/height_allcov_add.out.txt.save \
+ examples/impute_with_missing_base_add.out.txt.save \
+ examples/example_all.sh examples/height_base_add.out.txt.save \
+ examples/height_ngp2_int1_over_domin.out.txt.save \
+ examples/height_robust_add.out.txt.save examples/test.mldose \
+ examples/height_ngp2_allcov_add.out.txt.save \
+ examples/mmscore_InvSigma_aj.sex.age.dat \
+ examples/height_ngp2_robust_int1_2df.out.txt.save \
+ examples/mmscore_gen.dose.fvd examples/mmscore.R \
+ examples/test.dose.fvd examples/height_ngp2_domin.out.txt.save \
+ examples/test.dose.fvi \
+ examples/impute_with_missing_robust_add.out.txt.save \
+ examples/allheight.txt examples/mmscore_add.out.txt.save \
+ examples/coxph.out.txt_add.out.txt.save examples/mmscore_pheno.PHE \
+ examples/height_ngp2_robust_2df.out.txt.save \
+ examples/height_ngp2_int1_add.out.txt.save \
+ examples/mmscore_gen.prob.fvi \
+ examples/height_robust_int1_add.out.txt.save \
+ examples/logist.out.txt_add.out.txt.save \
+ examples/height_ngp2_allcov_recess.out.txt.save \
+ examples/impute_with_missing.PHE \
+ examples/height_ngp2_allcov_over_domin.out.txt.save \
+ examples/height_ngp2_add.out.txt.save examples/logist_data.txt \
+ examples/height_ngp2_int1_2df.out.txt.save \
+ examples/impute_with_missing_add.out.txt.save \
+ examples/height_ngp2_robust_domin.out.txt.save examples/height.txt
+
+dist_doc_DATA = $(docfiles)
+
+exampledir = $(pkgdatadir)/examples
+dist_example_DATA = $(examplefiles)
Copied: pkg/ProbABEL/Makefile.in (from rev 753, branches/ProbABEL/autotools-integration/ProbABEL/Makefile.in)
===================================================================
--- pkg/ProbABEL/Makefile.in (rev 0)
+++ pkg/ProbABEL/Makefile.in 2011-07-26 16:52:58 UTC (rev 755)
@@ -0,0 +1,796 @@
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+ doc/QuickStart.txt doc/short_coxph_data.txt doc/short_height.out.csv \
+ doc/short_height.txt doc/short_logist_data.txt doc/test_regression.R \
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+
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+ examples/height_ngp2_robust_int1_over_domin.out.txt.save \
+ examples/test.prob.fvi examples/mmscore_gen.prob.fvd \
+ examples/test.map examples/mldose.IDS \
+ examples/impute_with_missing.mlinfo \
+ examples/height_ngp2_robust_int1_recess.out.txt.save \
+ examples/height_ngp2_2df.out.txt.save examples/mmscore_gen.mlprob \
+ examples/mmscore_gen.mlinfo \
+ examples/height_ngp2_robust_recess.out.txt.save \
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+ examples/impute_with_missing_robust_int1_add.out.txt.save \
+ examples/test.mlinfo examples/regression_add.out.txt.save \
+ examples/height_ngp2_robust_add.out.txt.save \
+ examples/mmscore_gen.dose.fvi \
+ examples/impute_with_missing_allcov_add.out.txt.save \
+ examples/example_bt.sh examples/height_ngp2_int1_recess.out.txt.save \
+ examples/example_qt.sh examples/coxph_data.txt \
+ examples/height_ngp2_robust_int1_domin.out.txt.save \
+ examples/height_ngp2_allcov_2df.out.txt.save \
+ examples/impute_with_missing_int1_add.out.txt.save \
+ examples/mmscore_gen.mldose examples/example_mms.sh \
+ examples/height_ngp2_recess.out.txt.save \
+ examples/height_ngp2_over_domin.out.txt.save \
+ examples/height_ngp2_int1_domin.out.txt.save \
+ examples/height_ngp2_allcov_domin.out.txt.save \
+ examples/height_ngp2_robust_over_domin.out.txt.save \
+ examples/height_ngp2_robust_int1_add.out.txt.save \
+ examples/height_int1_add.out.txt.save \
+ examples/height_allcov_add.out.txt.save \
+ examples/impute_with_missing_base_add.out.txt.save \
+ examples/example_all.sh examples/height_base_add.out.txt.save \
+ examples/height_ngp2_int1_over_domin.out.txt.save \
+ examples/height_robust_add.out.txt.save examples/test.mldose \
+ examples/height_ngp2_allcov_add.out.txt.save \
+ examples/mmscore_InvSigma_aj.sex.age.dat \
+ examples/height_ngp2_robust_int1_2df.out.txt.save \
+ examples/mmscore_gen.dose.fvd examples/mmscore.R \
+ examples/test.dose.fvd examples/height_ngp2_domin.out.txt.save \
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+ examples/impute_with_missing_robust_add.out.txt.save \
+ examples/allheight.txt examples/mmscore_add.out.txt.save \
+ examples/coxph.out.txt_add.out.txt.save examples/mmscore_pheno.PHE \
+ examples/height_ngp2_robust_2df.out.txt.save \
+ examples/height_ngp2_int1_add.out.txt.save \
+ examples/mmscore_gen.prob.fvi \
+ examples/height_robust_int1_add.out.txt.save \
+ examples/logist.out.txt_add.out.txt.save \
+ examples/height_ngp2_allcov_recess.out.txt.save \
+ examples/impute_with_missing.PHE \
+ examples/height_ngp2_allcov_over_domin.out.txt.save \
+ examples/height_ngp2_add.out.txt.save examples/logist_data.txt \
+ examples/height_ngp2_int1_2df.out.txt.save \
+ examples/impute_with_missing_add.out.txt.save \
+ examples/height_ngp2_robust_domin.out.txt.save examples/height.txt
+
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+ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+ echo "$$d$$p"; \
+ done | $(am__base_list) | \
+ while read files; do \
+ echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(docdir)'"; \
+ $(INSTALL_DATA) $$files "$(DESTDIR)$(docdir)" || exit $$?; \
+ done
+
+uninstall-dist_docDATA:
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+ @list='$(dist_doc_DATA)'; test -n "$(docdir)" || list=; \
+ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+ test -n "$$files" || exit 0; \
+ echo " ( cd '$(DESTDIR)$(docdir)' && rm -f" $$files ")"; \
+ cd "$(DESTDIR)$(docdir)" && rm -f $$files
+install-dist_exampleDATA: $(dist_example_DATA)
+ @$(NORMAL_INSTALL)
+ test -z "$(exampledir)" || $(MKDIR_P) "$(DESTDIR)$(exampledir)"
+ @list='$(dist_example_DATA)'; test -n "$(exampledir)" || list=; \
+ for p in $$list; do \
+ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+ echo "$$d$$p"; \
+ done | $(am__base_list) | \
+ while read files; do \
+ echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(exampledir)'"; \
+ $(INSTALL_DATA) $$files "$(DESTDIR)$(exampledir)" || exit $$?; \
+ done
+
+uninstall-dist_exampleDATA:
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+ @list='$(dist_example_DATA)'; test -n "$(exampledir)" || list=; \
+ files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
+ test -n "$$files" || exit 0; \
+ echo " ( cd '$(DESTDIR)$(exampledir)' && rm -f" $$files ")"; \
+ cd "$(DESTDIR)$(exampledir)" && rm -f $$files
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+# (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+ @fail= failcom='exit 1'; \
+ for f in x $$MAKEFLAGS; do \
+ case $$f in \
+ *=* | --[!k]*);; \
+ *k*) failcom='fail=yes';; \
+ esac; \
+ done; \
+ dot_seen=no; \
+ target=`echo $@ | sed s/-recursive//`; \
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ echo "Making $$target in $$subdir"; \
+ if test "$$subdir" = "."; then \
+ dot_seen=yes; \
+ local_target="$$target-am"; \
+ else \
+ local_target="$$target"; \
+ fi; \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
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+ done; \
+ if test "$$dot_seen" = "no"; then \
+ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+ fi; test -z "$$fail"
+
+$(RECURSIVE_CLEAN_TARGETS):
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+ for f in x $$MAKEFLAGS; do \
+ case $$f in \
+ *=* | --[!k]*);; \
+ *k*) failcom='fail=yes';; \
+ esac; \
+ done; \
+ dot_seen=no; \
+ case "$@" in \
+ distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+ *) list='$(SUBDIRS)' ;; \
+ esac; \
+ rev=''; for subdir in $$list; do \
+ if test "$$subdir" = "."; then :; else \
+ rev="$$subdir $$rev"; \
+ fi; \
+ done; \
+ rev="$$rev ."; \
+ target=`echo $@ | sed s/-recursive//`; \
+ for subdir in $$rev; do \
+ echo "Making $$target in $$subdir"; \
+ if test "$$subdir" = "."; then \
+ local_target="$$target-am"; \
+ else \
+ local_target="$$target"; \
+ fi; \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ || eval $$failcom; \
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+tags-recursive:
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+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+ done
+ctags-recursive:
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+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+ done
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+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
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+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
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+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ mkid -fID $$unique
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+ empty_fix=.; \
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+ set "$$@" "$$include_option=$$here/$$subdir/TAGS"; \
+ fi; \
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+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
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+ END { if (nonempty) { for (i in files) print i; }; }'`; \
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+ $$unique; \
+ fi; \
+ fi
+ctags: CTAGS
+CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
+ $(TAGS_FILES) $(LISP)
+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ test -z "$(CTAGS_ARGS)$$unique" \
+ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+ $$unique
+
+GTAGS:
+ here=`$(am__cd) $(top_builddir) && pwd` \
+ && $(am__cd) $(top_srcdir) \
+ && gtags -i $(GTAGS_ARGS) "$$here"
+
+distclean-tags:
+ -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+ $(am__remove_distdir)
+ test -d "$(distdir)" || mkdir "$(distdir)"
+ @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ list='$(DISTFILES)'; \
+ dist_files=`for file in $$list; do echo $$file; done | \
+ sed -e "s|^$$srcdirstrip/||;t" \
+ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+ case $$dist_files in \
+ */*) $(MKDIR_P) `echo "$$dist_files" | \
+ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+ sort -u` ;; \
+ esac; \
+ for file in $$dist_files; do \
+ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+ if test -d $$d/$$file; then \
+ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+ if test -d "$(distdir)/$$file"; then \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+ cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+ else \
+ test -f "$(distdir)/$$file" \
+ || cp -p $$d/$$file "$(distdir)/$$file" \
+ || exit 1; \
+ fi; \
+ done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ test -d "$(distdir)/$$subdir" \
+ || $(MKDIR_P) "$(distdir)/$$subdir" \
+ || exit 1; \
+ fi; \
+ done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
+ $(am__relativize); \
+ new_distdir=$$reldir; \
+ dir1=$$subdir; dir2="$(top_distdir)"; \
+ $(am__relativize); \
+ new_top_distdir=$$reldir; \
+ echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
+ echo " am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
+ ($(am__cd) $$subdir && \
+ $(MAKE) $(AM_MAKEFLAGS) \
+ top_distdir="$$new_top_distdir" \
+ distdir="$$new_distdir" \
+ am__remove_distdir=: \
+ am__skip_length_check=: \
+ am__skip_mode_fix=: \
+ distdir) \
+ || exit 1; \
+ fi; \
+ done
+ -test -n "$(am__skip_mode_fix)" \
+ || find "$(distdir)" -type d ! -perm -755 \
+ -exec chmod u+rwx,go+rx {} \; -o \
+ ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
+ ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
+ ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
+ || chmod -R a+r "$(distdir)"
+dist-gzip: distdir
+ tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+ $(am__remove_distdir)
+
+dist-bzip2: distdir
+ tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
+ $(am__remove_distdir)
+
+dist-lzma: distdir
+ tardir=$(distdir) && $(am__tar) | lzma -9 -c >$(distdir).tar.lzma
+ $(am__remove_distdir)
+
+dist-xz: distdir
+ tardir=$(distdir) && $(am__tar) | xz -c >$(distdir).tar.xz
+ $(am__remove_distdir)
+
+dist-tarZ: distdir
+ tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
+ $(am__remove_distdir)
+
+dist-shar: distdir
+ shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
+ $(am__remove_distdir)
+
+dist-zip: distdir
+ -rm -f $(distdir).zip
+ zip -rq $(distdir).zip $(distdir)
+ $(am__remove_distdir)
+
+dist dist-all: distdir
+ tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+ $(am__remove_distdir)
+
+# This target untars the dist file and tries a VPATH configuration. Then
+# it guarantees that the distribution is self-contained by making another
+# tarfile.
+distcheck: dist
+ case '$(DIST_ARCHIVES)' in \
+ *.tar.gz*) \
+ GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
+ *.tar.bz2*) \
+ bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
+ *.tar.lzma*) \
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+ *.tar.xz*) \
+ xz -dc $(distdir).tar.xz | $(am__untar) ;;\
+ *.tar.Z*) \
+ uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
+ *.shar.gz*) \
+ GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
+ *.zip*) \
+ unzip $(distdir).zip ;;\
+ esac
+ chmod -R a-w $(distdir); chmod a+w $(distdir)
+ mkdir $(distdir)/_build
+ mkdir $(distdir)/_inst
+ chmod a-w $(distdir)
+ test -d $(distdir)/_build || exit 0; \
+ dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
+ && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
+ && am__cwd=`pwd` \
+ && $(am__cd) $(distdir)/_build \
+ && ../configure --srcdir=.. --prefix="$$dc_install_base" \
+ $(DISTCHECK_CONFIGURE_FLAGS) \
+ && $(MAKE) $(AM_MAKEFLAGS) \
+ && $(MAKE) $(AM_MAKEFLAGS) dvi \
+ && $(MAKE) $(AM_MAKEFLAGS) check \
+ && $(MAKE) $(AM_MAKEFLAGS) install \
+ && $(MAKE) $(AM_MAKEFLAGS) installcheck \
+ && $(MAKE) $(AM_MAKEFLAGS) uninstall \
+ && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
+ distuninstallcheck \
+ && chmod -R a-w "$$dc_install_base" \
+ && ({ \
+ (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
+ distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
+ } || { rm -rf "$$dc_destdir"; exit 1; }) \
+ && rm -rf "$$dc_destdir" \
+ && $(MAKE) $(AM_MAKEFLAGS) dist \
+ && rm -rf $(DIST_ARCHIVES) \
+ && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
+ && cd "$$am__cwd" \
+ || exit 1
+ $(am__remove_distdir)
+ @(echo "$(distdir) archives ready for distribution: "; \
+ list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
+ sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
+distuninstallcheck:
+ @$(am__cd) '$(distuninstallcheck_dir)' \
+ && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
+ || { echo "ERROR: files left after uninstall:" ; \
+ if test -n "$(DESTDIR)"; then \
+ echo " (check DESTDIR support)"; \
+ fi ; \
+ $(distuninstallcheck_listfiles) ; \
+ exit 1; } >&2
+distcleancheck: distclean
+ @if test '$(srcdir)' = . ; then \
+ echo "ERROR: distcleancheck can only run from a VPATH build" ; \
+ exit 1 ; \
+ fi
+ @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
+ || { echo "ERROR: files left in build directory after distclean:" ; \
+ $(distcleancheck_listfiles) ; \
+ exit 1; } >&2
+check-am: all-am
+check: check-recursive
+all-am: Makefile $(DATA)
+installdirs: installdirs-recursive
+installdirs-am:
+ for dir in "$(DESTDIR)$(docdir)" "$(DESTDIR)$(exampledir)"; do \
+ test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+ done
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+ @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+ `test -z '$(STRIP)' || \
+ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+ -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+ -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+ @echo "This command is intended for maintainers to use"
+ @echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-recursive
+ -rm -f $(am__CONFIG_DISTCLEAN_FILES)
+ -rm -f Makefile
+distclean-am: clean-am distclean-generic distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+html-am:
+
+info: info-recursive
+
+info-am:
+
+install-data-am: install-dist_docDATA install-dist_exampleDATA
+
+install-dvi: install-dvi-recursive
+
+install-dvi-am:
+
+install-exec-am:
+
+install-html: install-html-recursive
+
+install-html-am:
+
+install-info: install-info-recursive
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-pdf-am:
+
+install-ps: install-ps-recursive
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+ -rm -f $(am__CONFIG_DISTCLEAN_FILES)
+ -rm -rf $(top_srcdir)/autom4te.cache
+ -rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am: uninstall-dist_docDATA uninstall-dist_exampleDATA
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) ctags-recursive \
+ install-am install-strip tags-recursive
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+ all all-am am--refresh check check-am clean clean-generic \
+ ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \
+ dist-lzma dist-shar dist-tarZ dist-xz dist-zip distcheck \
+ distclean distclean-generic distclean-tags distcleancheck \
+ distdir distuninstallcheck dvi dvi-am html html-am info \
+ info-am install install-am install-data install-data-am \
+ install-dist_docDATA install-dist_exampleDATA install-dvi \
+ install-dvi-am install-exec install-exec-am install-html \
+ install-html-am install-info install-info-am install-man \
+ install-pdf install-pdf-am install-ps install-ps-am \
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/genabel -r 755
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