[Genabel-commits] r649 - pkg/webpages
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Feb 11 02:10:21 CET 2011
Author: yurii
Date: 2011-02-11 02:10:20 +0100 (Fri, 11 Feb 2011)
New Revision: 649
Added:
pkg/webpages/contribute.html
pkg/webpages/home.html
pkg/webpages/manuals.html
pkg/webpages/people.html
pkg/webpages/showcase.html
pkg/webpages/support.html
Modified:
pkg/webpages/packages.html
Log:
web-site pages
Added: pkg/webpages/contribute.html
===================================================================
--- pkg/webpages/contribute.html (rev 0)
+++ pkg/webpages/contribute.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,97 @@
+<p>
+There are many ways in which you can contribute, and we are open for suggestions.
+Here is a list of things you can do to help us, and surely you will get acknowledged
+(see People section [ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ])
+</p>
+
+<h3>Web-site</h3>
+<p>
+While you are browsing through this web-site, you may find broken links or
+some inconsistencies. We will appreciate if you report these to the web-site
+admin ( ADDRESS ). Your help will be acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ]
+</p>
+
+<h3>Help users</h3>
+<p>
+If you are experienced GenABEL user, subscribe to the GenABEL forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ],
+and answer questions from other users. Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ],
+and we will also assign an 'expert' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+</p>
+
+<h3>Bug reporting</h3>
+<p>
+If you identify a bug, please submit a bug report
+(see [ <a href="http://test.genabel.org/drupal6/?q=node/5#bug">Bug reporting</a> ]).
+Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ],
+and we will also assign a 'bug reporter' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+</p>
+
+<h3>Cleaning up the documentation</h3>
+<p>
+You can help cleaning up the documentation: there are many grammatical errors
+there, awkward phrasing, and unclear parts. If you are willing to do that,
+please contact one of the coordinators
+(see [ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ]).
+Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ],
+and we will also assign a 'doc writer' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+</p>
+
+<h3>Contribute a tutorial</h3>
+<p>
+While we try to have complete tutorial, we hope for your
+help with new ones. If you think you can contribute a
+tutorial, please contact us genabel-dev list
+(genabel-devel [at] lists [dot] r-forge [dot] r-project [dot] org) with your
+suggestion. We then will discuss how how to do that in the best way
+(e.g. we mostly use Sweave for developing the tutorials).
+Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ],
+and we will also assign a 'doc writer' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+</p>
+
+<h3>Bugs and new features</h3>
+<p>
+There are few bugs, and also missing features in GenABEL suite
+[ <a href="https://r-forge.r-project.org/tracker/?group_id=505">GenABEL tracker</a> ].
+We will greatly appreciate your help in fixing the bugs and adding new features.
+If you'd like to do that, please send an e-mail to the genabel-dev list
+(genabel-devel [at] lists [dot] r-forge [dot] r-project [dot] org) with your
+suggestion to co-ordinate your efforts in a case somebody is already working on that, and
+eventually contribute a patch.
+Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ] ,
+and we will also assign a 'contributor' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+and
+</p>
+
+<h3>New functionality</h3>
+<p>
+If you got bright new methodological idea, and you think it may fit
+into GenABEL suite framework (as a function or as a package),
+please contact the co-ordinators through
+the genabel-devel list
+(genabel-devel [at] lists [dot] r-forge [dot] r-project [dot] org) with your
+suggestion to co-ordinate your efforts in a case somebody is already working on that.
+We will discuss your idea, and eventually will give you full access to the repository.
+Your contribution will be
+acknowledged at "People" section
+[ <a href="http://test.genabel.org/drupal6/?q=node/83">People</a> ],
+and we will also assign a 'developer' icon for you on the forum
+[ <a href="http://forum.genabel.org">GenABEL forum</a> ]
+</p>
+
Added: pkg/webpages/home.html
===================================================================
--- pkg/webpages/home.html (rev 0)
+++ pkg/webpages/home.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,26 @@
+<p>
+GenABEL is a community open source project, aiming to
+facilitate statistical analyzes of polymorphic genomes data.
+GenABEL is developed
+and supported by users, for users. Our mission is to build a
+community based framework for transparent, open-source based,
+statistical genomics methodology development.
+</p>
+
+
+<p>
+GenABEL, or *ABEL, is an umbrella name for a number of software packages.
+Specific features of GenABEL include
+</p>
+<ul>
+<li>Effective memory management</li>
+<li>Support of modern methods for analysis in outbred populations</li>
+<li>Analysis of survival data</li>
+<li>Maximum Likelihood estimation of linear, logistic and Cox regression on genome-wide scale</li>
+<li>A range of functions specifically designed to help GWA analysis in samples of individuals from genetically isolated populations, and/or samples of related individuals (family-based design), and other analysis in presence of stratification</li>
+<li>Meta-analysis of GWAS data</li>
+<li>Extensive documentation (more then 200 pages of reference manuals and about 300 pages of tutorials)</li>
+<li>Many example data sets and exercises</li>
+</ul>
+
+News and news feed
Added: pkg/webpages/manuals.html
===================================================================
--- pkg/webpages/manuals.html (rev 0)
+++ pkg/webpages/manuals.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,24 @@
+<h3>Manuals for</h3>
+<ul>
+<li><em>DatABEL:</em>
+[ <a href="http://test.DatAbel.org/old/htmlDatA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/DatABEL/DatABEL.pdf">PDF</a> ]</li>
+<li><em>GenABEL:</em>
+[ <a href="http://test.genabel.org/old/htmlGenA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/GenABEL/GenABEL.pdf">PDF</a> ]</li>
+<li><em>ProbABEL:</em>
+[ <a href="http://test.genabel.org/old/ProbABEL_manual.html">HTML</a> |
+<a href="http://test.genabel.org/old/pdfs/ProbABEL_manual.pdf>PDF</a> ]</li>
+<li><em>ParallABEL:</em>
+[ <a href="http://test.ParallAbel.org/old/htmlParallA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/ParallABEL/ParallABEL.pdf">PDF</a> ]</li>
+<li><em>PredictABEL:</em>
+[ <a href="http://test.PredictAbel.org/old/htmlPredictA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/PredictABEL/PredictABEL.pdf">PDF</a> ]</li>
+<li><em>MixABEL:</em>
+[ <a href="http://test.MixAbel.org/old/htmlMixA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/MixABEL/MixABEL.pdf">PDF</a> ]</li>
+<li><em>MetABEL:</em>
+[ <a href="http://test.MetAbel.org/old/htmlMetA/00Index.html">HTML</a> |
+<a href="http://cran.at.r-project.org/web/packages/MetABEL/MetABEL.pdf">PDF</a> ]</li>
+</ul>
\ No newline at end of file
Modified: pkg/webpages/packages.html
===================================================================
--- pkg/webpages/packages.html 2011-02-10 20:58:16 UTC (rev 648)
+++ pkg/webpages/packages.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -1,3 +1,27 @@
+GenABEL, or *ABEL, is an umbrella name for a number of software packages
+aiming to facilitate statistical analyzes of polymorphic genomes data.
+This is reach program set which now allows very flexible genome-wide
+association (GWA) analysis (<a href="#GenABEL">GenABEL</a>,
+<a href="#ProbABEL">ProbABEL</a>, <a href="#MixABEL">MixABEL</a>), meta-analysis
+(<a href="#MetABEL">MetABEL</a>), parallelization of GWA analyzes
+(<a href="#ParallABEL">ParallABEL</a>), management of very large
+files (<a href="#DatABEL">DatABEL</a>), and facilitates
+evaluation of prediction (<a href="#PredictABEL">PredictABEL</a>).
+<p>
+Most likely, you only need one of the packages for your specific task.
+Figure out, which one you need, install, and use! If having questions,
+please refer to the "<a href="http://test.genabel.org/drupal6/?q=node/5">Support</a>"
+section of this web-site.
+</p>
+<p>
+The code for latest development versions of all packages are available from
+<a href="http://r-forge.r-project.org/projects/genabel/" target="_blank">GenABEL on R-forge</a>
+</p>
+<p>
+For stable releases, use CRAN version for R packages or links provided at this page
+</p>
+
+<a name="GenABEL"></a>
<h3>GenABEL</h3>
Genome-wide association analysis for quantitative, binary and time-till-event traits
<ul>
@@ -5,36 +29,42 @@
<li><em>Install:</em> start R, then type install.packages("GenABEL")</li>
<li><em>Quick start:</em> start R, then type library(GenABEL); demo(ge03d2)</li>
<li><em>Tutorial:</em> see "ABEL tutorial", starting from section "Introduction to GenABEL"</li>
-<li><em>Manual:</em> [ PDF | HTML]</li>
-<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Manual:</em>
+[ <a href="http://cran.at.r-project.org/web/packages/GenABEL/GenABEL.pdf">PDF</a> |
+<a href="http://test.genabel.org/old/htmlGenA/00Index.html">HTML</a>]</li>
+<li><em>Reference:</em>
+<a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=GenABEL&Search=Search" target="_blank">see our bug tracker</a></li>
</ul>
+<a name="MetABEL"></a>
<h3>MetABEL</h3>
Meta-analysis of genome-wide SNP association results
<ul>
<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> start R, then type install.packages("MetABEL") (!!!)</li>
-<li><em>Quick start:</em> start R, install.packages("MetABEL"); library(MetABEL)</li>
+<li><em>Install:</em> start R, then type install.packages("MetABEL")</li>
+<li><em>Quick start:</em> start R, then library(MetABEL), read the tutorial</li>
<li><em>Tutorial:</em> see "ABEL tutorial", section "Meta-analysis of GWA scans"</li>
-<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/MetABEL/MetABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlMetA/00Index.html">HTML</a>]</li>
<li><em>Reference:</em> no specific reference, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MetABEL&Search=Search" target="_blank">see our bug tracker</a></li>
</ul>
+<a name="ProbABEL"></a>
<h3>ProbABEL</h3>
Genome-wide association analysis of imputed data
<ul>
<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> download source code, see README [ source code | Mas OS binary | Win 64 binary ]</li>
+<li><em>Install:</em> Download source code, unpack, read ProbABEL/doc/INSTALL [ <a href="http://test.genabel.org/old/software/ProbABEL_0.1-9d.tar.gz">stable source code</a> | Mas OS binary | Win 64 binary | Win 32 binary ]</li>
<li><em>Quick start:</em> after install, cd examples; sh example_all.sh</li>
<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
-<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Manual:</em> [ <a href="http://test.genabel.org/old/pdfs/ProbABEL_manual.pdf">PDF</a> | <a href="http://test.genabel.org/old/ProbABEL_manual.html">HTML</a>]</li>
<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/20233392" target="_blank">ProbABEL package for genome-wide association analysis of imputed data</a></li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ProbABEL&Search=Search" target="_blank">see our bug tracker</a></li>
</ul>
+<a name="PredictABEL"></a>
<h3>PredictABEL</h3>
Assess the performance of risk models for binary outcomes
<ul>
@@ -47,43 +77,43 @@
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=PredictABEL&Search=Search" target="_blank">see our bug tracker</a></li>
</ul>
+<a name="DatABEL"></a>
+<h3>DatABEL</h3>
+File-based access to large matrices stored on HDD in binary format
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("DatABEL")</li>
+<li><em>Quick start:</em> start R, then library(DatABEL); help("DatABEL-package")</li>
+<li><em>Tutorial:</em> see "Introduction to DatABEL" in Tutorials</li>
+<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/DatABEL/DatABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlDatA/00Index.html">HTML</a> ]</li>
+<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=DatABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+<a name="ParallABEL"></a>
<h3>ParallABEL</h3>
-WHAT
+Generalized parallelization of Genome-Wide Association Studies
<ul>
+<li><em>Web-site:</em> <a href="http://www.sc.psu.ac.th/units/genome/CGBR/ParallABEL/">ParallABEL page</a> from U. Sangket</li>
<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> ???</li>
-<li><em>Quick start:</em> ???</li>
-<li><em>Tutorial:</em> ???</li>
+<li><em>Install:</em> </li>
+<li><em>Quick start:</em> </li>
+<li><em>Tutorial:</em> </li>
<li><em>Manual:</em> [ PDF | HTML]</li>
-<li><em>Reference:</em> <a href="" target="_blank"></a></li>
+<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/20429914" target="_blank">ParallABEL: an R library for generalized parallelization of genome-wide association studies</a></li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ParallABEL&Search=Search" target="_blank">see our bug tracker</a></li>
</ul>
+<a name="MixABEL"></a>
<h3>MixABEL</h3>
More mixed models for genome-wide association analysis; experimenting with GSL, multiple input formats, iterator, parallelization through threads.
<ul>
<li><em>Status:</em> beta, experimental</li>
-<li><em>Install:</em> Install GNU GSL v. >xxx, download source code, R CMD INSTALL MixABEL</li>
+<li><em>Install:</em> Install <a href="http://www.gnu.org/software/gsl/">GNU GSL</a>, download proper distribution and install [ <a href="http://test.genabel.org/old/software/MixABEL_0.0-9.tar.gz">source code</a> | Windows package | Mac OS package] </li>
<li><em>Quick start:</em> start R, then library(MixABEL); example(GWFGLS)</li>
<li><em>Tutorial:</em> Will be embed as extension to see "ABEL tutorial", section "GWA analysis in presence of stratiÞcation"</li>
-<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Manual:</em> [ <a href="http://test.genabel.org/old/pdfs/MixABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlMixA/00Index.html">HTML</a>]</li>
<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MixABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
-
-
-The code for latest development versions of all packages are available from <a href="http://r-forge.r-project.org/projects/genabel/" target="_blank">GenABEL on R-forge</a>
-
-<h3></h3>
-WHAT
-<ul>
-<li><em>Status:</em> </li>
-<li><em>Install:</em> </li>
-<li><em>Quick start:</em> </li>
-<li><em>Tutorial:</em> </li>
-<li><em>Manual:</em> [ PDF | HTML]</li>
-<li><em>Reference:</em> </li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=PACKAGE&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
-
+</ul>
\ No newline at end of file
Added: pkg/webpages/people.html
===================================================================
--- pkg/webpages/people.html (rev 0)
+++ pkg/webpages/people.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,51 @@
+<h3>Coordination</h3>
+<ul>
+<li>Yurii Aulchenko (yurii [dot] aulchenko [at] gmail [dot] com): project coordinator</li>
+<li>Lennart Karssen (l [dot] karssen [at] erasmusmc [dot] nl): admin for R-forge & GenABEL.org, code @ProbABEL</li>
+</ul>
+
+<h3>Novel methodology</h3>
+<ul>
+<li>Grammar: Yurii Aulchenko, Chris Haley, DJ de Koning</li>
+<li>Grammar+: Gulnara Svischeva, Tatiana Axenovich, Yurii Aulchenko</li>
+<li>GenABEL::cocohet: Fan Liu, Maksim Struchalin</li>
+<li>Variance heterogeneity analysis (VariABEL): Maksim Struchalin</li>
+<li>LiLo: Nicola Pirastu</li>
+<li>MixABEL::FastMixedModel: William Astle</li>
+<li>MixABEL::GWFGLS: Yurii Aulchenko</li>
+<li>Parallelization: Unitsa Sangket, Surakameth Mahasirimongkol, Yurii Aulchenko</li>
+</ul>
+
+<h3>Code development</h3>
+<ul>
+<li>Yurii Aulchenko: GenABEL, MetABEL, ProbABEL, DatABEL, MixABEL</li>
+<li>Maksim Struchalin: VariABEL, GenABEL, ProbABEL, MetABEL</li>
+<li>Lennart Karssen: ProbABEL, PredictABEL</li>
+<li>Stepan Yakovenko: DatABEL, MixABEL</li>
+<li>Andrey Chernyh: DatABEL</li>
+<li>Unitsa Sangket: ParallABEL</li>
+<li>Surakameth Mahasirimongkol: ParallABEL</li>
+<li>William Astle: MixABEL</li>
+<li>Suman Kundu: PredictABEL</li>
+<li>Cecile Janssens: PredictABEL</li>
+<li>Erik Roos: iterator framework</li>
+<li>Marcel Kempenaar: iterator framework</li>
+</ul>
+
+<h3>Code/patches</h3>
+Toby Johnson, John Barnard, Nadezhda Belonogova, Han Chen, Vadim Pinchuk
+
+<h3>Bug reports</h3>
+Aron Joon, Richard Ahn, Kati Kristiansson, Ross Fraser, Surakameth Mahasirimongkol, Lorna Lopez, Nadezhda Belonogova
+
+<h3>Testing</h3>
+Elena Gusareva, Nicola Pirastu, Gulnara Svischeva, Linda Broer
+
+<h3>User support</h3>
+[we will see who are actively answering questions on forum.genabel.org]
+
+<h3>Web-site support</h3>
+[we will see who will contribute]
+
+<h3>Note</h3>
+Large part of GenABEL packages are R-package, and we greatly appreciate work done by <a href="http://www.r-project.org">R</a> team, <a href="http://cran.r-project.org/">CRAN</a>, and <a href="http://r-forge.r-project.org/">R-forge</a>
\ No newline at end of file
Added: pkg/webpages/showcase.html
===================================================================
--- pkg/webpages/showcase.html (rev 0)
+++ pkg/webpages/showcase.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,14 @@
+<h3>Publications</h3>
+<ul>
+<li> <a href="http://www.nytimes.com/2009/01/07/technology/business-computing/07program.html">A New-York Times article about R</a>, also mentioning GenABEL (New York Times)
+<li> <a href="http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">Six novel lipid level loci</a> identified with the help of <a href="http://mga.bionet.nsc.ru/~yurii/ABEL/">*ABEL</a> products (Nature Genetics)
+<li> <a href="http://www.ncbi.nlm.nih.gov/pubmed/18
+997785?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">Novel Multiple Sclerosis locus and pathway</a> identified using GenABEL (Nature Genetics)
+<li> <a href="http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">Novel height locus</a> identified with the help of <a href="http://mga.bionet.nsc.ru/~yurii/ABEL/">*ABEL</a> products (Human Molecular Genetics)
+<li><a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011117">Genetic Loci Involved in Antibody Response to <i>Mycobacterium avium ssp. paratuberculosis</i> in Cattle</a>, identified with the help of GenABEL (PLoS ONE)
+<li> <a href="http://www.ncbi.nlm.nih.gov/pubmed/18252221?ordinalpos=17&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum">Eye colour loci</a> discovered using GenABEL (American Journal of Human Genetics)
+<li> ...
+<li> In total: 92 papers citing GenABEL and ProbABEL packages, and GRAMMAR and GRAMMAR-GC methods (ISI Web of Knowledge, 2010.06.18)
+</ul>
+
+<h3>Screenshots</h3>
\ No newline at end of file
Added: pkg/webpages/support.html
===================================================================
--- pkg/webpages/support.html (rev 0)
+++ pkg/webpages/support.html 2011-02-11 01:10:20 UTC (rev 649)
@@ -0,0 +1,27 @@
+<p>
+Here are few typical questions new GenABEL users may have:
+</p>
+
+<em>How do I run specific analysis?</em>
+<ul>
+<li>Look through general GenABEL tutorial [ <a href="http://test.genabel.org/drupal6/?q=htmlTut">Tutorials</a> ] and decide on what package to use [ <a href="http://test.genabel.org/drupal6/?q=node/6">Packages</a> ]</li>
+<li>Carefully read tutorial (if available) section specific to your analyzes, figure out what functions you need to use, run the examples</li>
+<li>Read help pages for relevant functions (in R, use 'help(functionname)'; or see Manuals section [ <a href="http://test.genabel.org/drupal6/?q=node/84">Manuals</a> ])</li>
+<li>If it is still not clear how to run analysis, ask your question at GenABEL forum [ <a href="http://forum.genabel.org">GenABEL forum</a> ] </li>
+</ul>
+
+<em>I want to do some special analysis, which does not seem to be supported. How can I figure out if there is a workaround or if this is a planned feature?</em>
+<ul>
+<li>Look through general GenABEL tutorial [ <a href="http://test.genabel.org/drupal6/?q=htmlTut">Tutorials</a> ]</li>
+<li>Search Tutorials [ <a href="http://test.genabel.org/drupal6/?q=htmlTut">Tutorials</a> ] and Manuals [ <a href="http://test.genabel.org/drupal6/?q=node/84">Manuals</a> ]</li>
+<li>If you can not find anything, ask your question at GenABEL forum [ <a href="http://forum.genabel.org">GenABEL forum</a> ]. See <a href="http://forum.genabel.org/viewtopic.php?f=6&t=15">example</a></li>
+<li>If no answer, contact developers to file in feature request genabel-devel [at] lists [dot] r-forge [dot] r-project [dot] org</li>
+</ul>
+
+<a name="bug"></a>
+<em>A command behaves not in a way I expect, is that a bug?</em>
+<ul>
+<li>Read help pages for the functions (in R, use 'help(functionname)'; or see Manuals section [ <a href="http://test.genabel.org/drupal6/?q=node/84">Manuals</a> ])</li>
+<li>If still not solved, post suggested bug at GenABEL forum [ <a href="http://forum.genabel.org">GenABEL forum</a> ]. See an <a href="http://forum.genabel.org/viewtopic.php?f=6&t=4">example here</a>.</li>
+</ul>
+
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