[Genabel-commits] r806 - pkg/VariABEL/man

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2011-12-02 16:56:55 +0100 (Fri, 02 Dec 2011)
New Revision: 806

Modified:
   pkg/VariABEL/man/var_test_gwaa.Rd
Log:
added references to documentation

Modified: pkg/VariABEL/man/var_test_gwaa.Rd
===================================================================
--- pkg/VariABEL/man/var_test_gwaa.Rd	2011-12-02 15:49:08 UTC (rev 805)
+++ pkg/VariABEL/man/var_test_gwaa.Rd	2011-12-02 15:56:55 UTC (rev 806)
@@ -39,14 +39,26 @@
 %	\code{\link{var.meta}},
 %}
 \examples{
-	require(GenABEL)
+	if (require(GenABEL)) {
 	data(srdta)
-	result1 <- var_test_gwaa(bt~qt1+qt2, genodata=srdta at gtdata, phenodata=srdta at phdata)
+	result1 <- var_test_gwaa(bt~qt1+qt2, genodata=gtdata(srdta), phenodata=phdata(srdta))
 	
 #if there is no covariates needed:
-	result2 <- var_test_gwaa("bt", genodata=srdta at gtdata, phenodata=srdta at phdata)
+	result2 <- var_test_gwaa("bt", genodata=gtdata(srdta), phenodata=phdata(srdta))
+	}
 
 }
+
+\references{
+
+	Struchalin et al., Variance heterogeneity analysis for detection of potentially 
+	interacting genetic loci: method and its limitations. 
+	BMC Genetics 2010, 11:92, doi:10.1186/1471-2156-11-92
+	
+	Struchalin et al., An R package ÓVariABELÓ for genome-wide searching of
+	potentially interacting loci by testing genotypic variance heterogeneity. Submitted. 
+	
+}
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \keyword{manip}