[Genabel-commits] r761 - in pkg/GenABEL: . R

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2011-08-22 10:32:43 +0200 (Mon, 22 Aug 2011)
New Revision: 761

Modified:
   pkg/GenABEL/CHANGES.LOG
   pkg/GenABEL/R/convert.snp.tped.R
Log:
Changed default value for the strand option in convert.snp.tped() to u instead of +. Now convert.snp.tped() and convert.snp.ped() have the same defaults. This closes bug #1432.

Modified: pkg/GenABEL/CHANGES.LOG
===================================================================
--- pkg/GenABEL/CHANGES.LOG	2011-08-22 07:52:44 UTC (rev 760)
+++ pkg/GenABEL/CHANGES.LOG	2011-08-22 08:32:43 UTC (rev 761)
@@ -1,3 +1,5 @@
+The default value for the stand option to convert.snp.tped() is now "u", instead of "+". Now convert.snp.tped() and convert.snp.ped() have the same defaults.
+
 *** v. 1.6-8 (2011.07.15)
 
 Added patch of bug [#1322] + regression test (contributed 

Modified: pkg/GenABEL/R/convert.snp.tped.R
===================================================================
--- pkg/GenABEL/R/convert.snp.tped.R	2011-08-22 07:52:44 UTC (rev 760)
+++ pkg/GenABEL/R/convert.snp.tped.R	2011-08-22 08:32:43 UTC (rev 761)
@@ -1,5 +1,5 @@
 "convert.snp.tped" <-
-  function(tpedfile,tfamfile,outfile,strand="+",bcast=10000) {
+  function(tpedfile,tfamfile,outfile,strand="u",bcast=10000) {
 
 	alcodes <- alleleID.codes()