[Genabel-commits] r708 - pkg/ProbABEL/src

[noreply at r-forge.r-project.org]

Author: lckarssen
Date: 2011-04-15 00:40:26 +0200 (Fri, 15 Apr 2011)
New Revision: 708

Modified:
   pkg/ProbABEL/src/prepare_data.R
Log:
- Fixed bug in comment which referred to non-exsiting getIDS.pl, the file is actually named extIDS.pl
- Fixed typo in other comment.


Modified: pkg/ProbABEL/src/prepare_data.R
===================================================================
--- pkg/ProbABEL/src/prepare_data.R	2011-04-03 09:03:22 UTC (rev 707)
+++ pkg/ProbABEL/src/prepare_data.R	2011-04-14 22:40:26 UTC (rev 708)
@@ -1,7 +1,7 @@
 #
 # file containing all phenotypes
 # variables should be separated by space or tab, missing values coded as NA
-# header line should contain variable names. 
+# header line should contain variable names.
 # Compulsory key variable should be named "id"
 # All people listed in ids_order_file should be present in original_phenofile
 #
@@ -9,7 +9,7 @@
 
 #
 # IDs present in mldose file (in mldoes file order)
-# normally generated with getIDS.pl
+# normally generated with extIDS.pl
 #
 ids_order_file <- "mldose.IDS"
 
@@ -19,7 +19,7 @@
 output_phenofile <- "height.txt"
 
 #
-# trait to be analysied 
+# trait to be analysed
 # (name should be the same as in the header line of original_phenofile)
 # the analysed trait comes first
 #
@@ -50,4 +50,3 @@
 fvprob <- mach2databel(imputedg="test.mlprob",mlinfo="test.mlinfo",out="test.prob",isprob=TRUE)
 mmdose <- mach2databel("mmscore_gen.mldose","mmscore_gen.mlinfo","mmscore_gen.dose")
 mmprob <- mach2databel("mmscore_gen.mlprob","mmscore_gen.mlinfo","mmscore_gen.prob",isprob=TRUE)
-