[Ecopd-commits] r86 - branches/single-tree/man

[noreply at r-forge.r-project.org]

Author: regetz
Date: 2009-11-18 20:26:09 +0100 (Wed, 18 Nov 2009)
New Revision: 86

Modified:
   branches/single-tree/man/minTL.Rd
   branches/single-tree/man/pairdist.Rd
Log:
updated examples in pairdist and minTL docs


Modified: branches/single-tree/man/minTL.Rd
===================================================================
--- branches/single-tree/man/minTL.Rd	2009-11-18 19:14:46 UTC (rev 85)
+++ branches/single-tree/man/minTL.Rd	2009-11-18 19:26:09 UTC (rev 86)
@@ -19,6 +19,9 @@
 \details{
   TODO
 }
+\note{
+  This function isn't currently useful for much of anything.
+}
 \value{
   For \code{minTL}, a named numeric vector of the same length as tips of
   tree. (\code{NULL} is returned if the tree has no assigned minTL
@@ -26,6 +29,7 @@
 }
 \author{Jim Regetz (regetz at nceas.ucsb.edu)}
 \examples{
-  data(weeds)
-  minTL(weeds$A)
+  phy <- phylo4d(weeds, "A")
+  minTL(phy) <- 1:5
+  minTL(phy)
 }

Modified: branches/single-tree/man/pairdist.Rd
===================================================================
--- branches/single-tree/man/pairdist.Rd	2009-11-18 19:14:46 UTC (rev 85)
+++ branches/single-tree/man/pairdist.Rd	2009-11-18 19:26:09 UTC (rev 86)
@@ -29,11 +29,9 @@
   which \code{pairdist} is based.
 }
 \examples{
-  data(weeds)
-
   # all pairwise distances
-  pairdist(weeds$A)
+  pairdist(weeds)
 
   # pairwise distances between tips, with labels and dim names
-  pairdist(weeds$A, type="tip", use.labels=TRUE)
+  pairdist(weeds, type="tip", use.labels=TRUE)
 }