[Dream-commits] r41 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon May 18 11:09:20 CEST 2015
Author: josephguillaume
Date: 2015-05-18 11:09:20 +0200 (Mon, 18 May 2015)
New Revision: 41
Modified:
www/index.php
Log:
Add reference to 2013 swat paper
Modified: www/index.php
===================================================================
--- www/index.php 2015-05-18 08:45:42 UTC (rev 40)
+++ www/index.php 2015-05-18 09:09:20 UTC (rev 41)
@@ -1,107 +1,108 @@
-
-<!-- This is the project specific website template -->
-<!-- It can be changed as liked or replaced by other content -->
-
-<?php
-
-$domain=ereg_replace('[^\.]*\.(.*)$','\1',$_SERVER['HTTP_HOST']);
-$group_name=ereg_replace('([^\.]*)\..*$','\1',$_SERVER['HTTP_HOST']);
-$themeroot='http://r-forge.r-project.org/themes/rforge/';
-
-echo '<?xml version="1.0" encoding="UTF-8"?>';
-?>
-<!DOCTYPE html
- PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en ">
-
- <head>
- <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
- <title><?php echo $group_name; ?></title>
- <link href="<?php echo $themeroot; ?>styles/estilo1.css" rel="stylesheet" type="text/css" />
- </head>
-
-<body>
-
-<!-- R-Forge Logo -->
-<table border="0" width="100%" cellspacing="0" cellpadding="0">
-<tr><td>
-<a href="/"><img src="<?php echo $themeroot; ?>/images/logo.png" border="0" alt="R-Forge Logo" /> </a> </td> </tr>
-</table>
-
-
-<!-- get project title -->
-<!-- own website starts here, the following may be changed as you like -->
-
-<?php if ($handle=fopen('http://'.$domain.'/export/projtitl.php?group_name='.$group_name,'r')){
-$contents = '';
-while (!feof($handle)) {
- $contents .= fread($handle, 8192);
-}
-fclose($handle);
-echo $contents; } ?>
-
-<!-- end of project description -->
-
-<p> The <strong>project summary page</strong> you can find <a href="http://<?php echo $domain; ?>/projects/<?php echo $group_name; ?>/"><strong>here</strong></a>. </p>
-
-For information on how to use dream, please run in R:<ul>
-<li><i>help("dreamCalibrate")</i> - to calibrate a function using dream</li>
-<li><i>help("dream")</i> - for low-level interface </li>
-<li><i>demo(example1)</i> - Fitting a banana shaped distribution</li>
-<li><i>demo(example2)</i> - Fitting an n-dimensional Gaussian distribution</li>
-<li><i>demo(FME.nonlinear.model)</i> - Calibrating the non-linear model shown
- in the <a href="http://fme.r-forge.r-project.org/">FME package</a> vignette</li>
-<li><i>demo(FME.nonlinear.model_parallelisation)</i> - Example of parallelisation using the <a href="http://cran.r-project.org/web/packages/snow/index.html">SNOW package</a></li>
-<li><i>demo(parallelisation_chain_id)</i> - Example of parallelisation when DREAM calls an external model using batch files in separate folders.</li>
-</ul>
-<p>
-To cite the DREAM algorithm please use:
-<ul>
-<li>
- Vrugt, J. A., ter Braak, C. J. F., Diks, C. G. H., Robinson, B. A.,
- Hyman, J. M., Higdon, D., 2009. Accelerating Markov chain Monte Carlo
- simulation by differential evolution with self-adaptive randomized
- subspace sampling. <b>International Journal of Nonlinear Sciences
- and Numerical Simulation</b> 10 (3), 273-290. DOI: <a href="http://dx.doi.org/10.1515/IJNSNS.2009.10.3.273">10.1515/IJNSNS.2009.10.3.273</a>
-</li></ul>
-<p>
-To cite the dream package, please use:<br><ul><li>
- Joseph Guillaume and Felix Andrews (2012). dream: DiffeRential
- Evolution Adaptive Metropolis. R package version 0.4-2. URL
- <a href="http://CRAN.R-project.org/package=dream">http://CRAN.R-project.org/package=dream</a>
-</li></ul>
-
-For additional information on the algorithm also see:<ul>
-<li>
- Vrugt, J. A., ter Braak, C. J. F., Gupta, H. V., Robinson, B. A.,
- 2009. Equifinality of formal (DREAM) and informal (GLUE) Bayesian
- approaches in hydrologic modeling?
- <b>Stochastic Environmental Research and Risk Assessment</b> 23 (7), 1011--1026.
- DOI: <a href="http://dx.doi.org/10.1007/s00477-008-0274-y">10.1007/s00477-008-0274-y</a>
-</li>
-<li>
-An <a href="./swat/LREWswI_synthetic.zip">example of parallelisation of DREAM for the SWAT model</a> (ZIP file) can be downloaded. Thanks to John Joseph for this contribution.
-</li>
-</ul>
-
-<p>
-This implementation of DREAM has been tested against the original Matlab implementation. See <a href="./matlab_test/example1.R">example1.R</a> and <a href="./matlab_test/example2.R">example2.R</a>
-<p>
-Please note that the dream_zs and dream_d algorithms may be superior in your circumstances. These are not implemented in this package. Please read the following references for details:
-<ul>
-<li>
-Vrugt, J. A. and Ter Braak, C. J. F. (2011) DREAM(D): an adaptive Markov Chain Monte Carlo simulation algorithm to solve discrete, noncontinuous, and combinatorial posterior parameter estimation problems, <b>Hydrol. Earth Syst. Sci.</b>, 15, 3701-3713, DOI: <a href="http://dx.doi.org/10.5194/hess-15-3701-2011">10.5194/hess-15-3701-2011</a>
-</li>
-<li>
-ter Braak, C. and J. Vrugt (2008). Differential Evolution Markov Chain
-with snooker updater and fewer chains. <b>Statistics and Computing</b> 18(4): 435-446 DOI: <a href="http://dx.doi.org/10.1007/s11222-008-9104-9">10.1007/s11222-008-9104-9</a>
-</li>
-<li>
-Laloy,E., and J.A. Vrugt. 2012. High-dimensional posterior exploration
-of hydrologic models using multiple-try DREAM(ZS) and high-performance
-computing. <b>Water Resources Research</b>, 48, W0156. DOI <a href="http://dx.doi.org/10.1029/2011WR010608">10.1029/2011WR010608</a>
-</li></ul>
-
-</body>
-</html>
+
+<!-- This is the project specific website template -->
+<!-- It can be changed as liked or replaced by other content -->
+
+<?php
+
+$domain=ereg_replace('[^\.]*\.(.*)$','\1',$_SERVER['HTTP_HOST']);
+$group_name=ereg_replace('([^\.]*)\..*$','\1',$_SERVER['HTTP_HOST']);
+$themeroot='http://r-forge.r-project.org/themes/rforge/';
+
+echo '<?xml version="1.0" encoding="UTF-8"?>';
+?>
+<!DOCTYPE html
+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en ">
+
+ <head>
+ <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
+ <title><?php echo $group_name; ?></title>
+ <link href="<?php echo $themeroot; ?>styles/estilo1.css" rel="stylesheet" type="text/css" />
+ </head>
+
+<body>
+
+<!-- R-Forge Logo -->
+<table border="0" width="100%" cellspacing="0" cellpadding="0">
+<tr><td>
+<a href="/"><img src="<?php echo $themeroot; ?>/images/logo.png" border="0" alt="R-Forge Logo" /> </a> </td> </tr>
+</table>
+
+
+<!-- get project title -->
+<!-- own website starts here, the following may be changed as you like -->
+
+<?php if ($handle=fopen('http://'.$domain.'/export/projtitl.php?group_name='.$group_name,'r')){
+$contents = '';
+while (!feof($handle)) {
+ $contents .= fread($handle, 8192);
+}
+fclose($handle);
+echo $contents; } ?>
+
+<!-- end of project description -->
+
+<p> The <strong>project summary page</strong> you can find <a href="http://<?php echo $domain; ?>/projects/<?php echo $group_name; ?>/"><strong>here</strong></a>. </p>
+
+For information on how to use dream, please run in R:<ul>
+<li><i>help("dreamCalibrate")</i> - to calibrate a function using dream</li>
+<li><i>help("dream")</i> - for low-level interface </li>
+<li><i>demo(example1)</i> - Fitting a banana shaped distribution</li>
+<li><i>demo(example2)</i> - Fitting an n-dimensional Gaussian distribution</li>
+<li><i>demo(FME.nonlinear.model)</i> - Calibrating the non-linear model shown
+ in the <a href="http://fme.r-forge.r-project.org/">FME package</a> vignette</li>
+<li><i>demo(FME.nonlinear.model_parallelisation)</i> - Example of parallelisation using the <a href="http://cran.r-project.org/web/packages/snow/index.html">SNOW package</a></li>
+<li><i>demo(parallelisation_chain_id)</i> - Example of parallelisation when DREAM calls an external model using batch files in separate folders.</li>
+</ul>
+<p>
+To cite the DREAM algorithm please use:
+<ul>
+<li>
+ Vrugt, J. A., ter Braak, C. J. F., Diks, C. G. H., Robinson, B. A.,
+ Hyman, J. M., Higdon, D., 2009. Accelerating Markov chain Monte Carlo
+ simulation by differential evolution with self-adaptive randomized
+ subspace sampling. <b>International Journal of Nonlinear Sciences
+ and Numerical Simulation</b> 10 (3), 273-290. DOI: <a href="http://dx.doi.org/10.1515/IJNSNS.2009.10.3.273">10.1515/IJNSNS.2009.10.3.273</a>
+</li></ul>
+<p>
+To cite the dream package, please use:<br><ul><li>
+ Joseph Guillaume and Felix Andrews (2012). dream: DiffeRential
+ Evolution Adaptive Metropolis. R package version 0.4-2. URL
+ <a href="http://CRAN.R-project.org/package=dream">http://CRAN.R-project.org/package=dream</a>
+</li></ul>
+
+For additional information on the algorithm also see:<ul>
+<li>
+ Vrugt, J. A., ter Braak, C. J. F., Gupta, H. V., Robinson, B. A.,
+ 2009. Equifinality of formal (DREAM) and informal (GLUE) Bayesian
+ approaches in hydrologic modeling?
+ <b>Stochastic Environmental Research and Risk Assessment</b> 23 (7), 1011--1026.
+ DOI: <a href="http://dx.doi.org/10.1007/s00477-008-0274-y">10.1007/s00477-008-0274-y</a>
+</li>
+<li>
+An <a href="./swat/LREWswI_synthetic.zip">example of parallelisation of DREAM for the SWAT model</a> (ZIP file) can be downloaded. Thanks to John Joseph for this contribution. This example is documented in the publication:
+<br/> Joseph, J.F., J.H.A. Guillaume (2013) Using a parallelized MCMC algorithm in R to identify appropriate likelihood functions for SWAT, <b>Environmental Modelling & Software</b>, 46, pp 292-298, DOI: <a href="http://dx.doi.org/10.1016/j.envsoft.2013.03.012">10.1016/j.envsoft.2013.03.012</a>.
+</li>
+</ul>
+
+<p>
+This implementation of DREAM has been tested against the original Matlab implementation. See <a href="./matlab_test/example1.R">example1.R</a> and <a href="./matlab_test/example2.R">example2.R</a>
+<p>
+Please note that the dream_zs and dream_d algorithms may be superior in your circumstances. These are not implemented in this package. Please read the following references for details:
+<ul>
+<li>
+Vrugt, J. A. and Ter Braak, C. J. F. (2011) DREAM(D): an adaptive Markov Chain Monte Carlo simulation algorithm to solve discrete, noncontinuous, and combinatorial posterior parameter estimation problems, <b>Hydrol. Earth Syst. Sci.</b>, 15, 3701-3713, DOI: <a href="http://dx.doi.org/10.5194/hess-15-3701-2011">10.5194/hess-15-3701-2011</a>
+</li>
+<li>
+ter Braak, C. and J. Vrugt (2008). Differential Evolution Markov Chain
+with snooker updater and fewer chains. <b>Statistics and Computing</b> 18(4): 435-446 DOI: <a href="http://dx.doi.org/10.1007/s11222-008-9104-9">10.1007/s11222-008-9104-9</a>
+</li>
+<li>
+Laloy,E., and J.A. Vrugt. 2012. High-dimensional posterior exploration
+of hydrologic models using multiple-try DREAM(ZS) and high-performance
+computing. <b>Water Resources Research</b>, 48, W0156. DOI <a href="http://dx.doi.org/10.1029/2011WR010608">10.1029/2011WR010608</a>
+</li></ul>
+
+</body>
+</html>
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