[Dplr-commits] r978 - pkg/dplR/man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Mon Mar 23 15:27:43 CET 2015 

Author: mvkorpel
Date: 2015-03-23 15:27:43 +0100 (Mon, 23 Mar 2015)
New Revision: 978

Modified:
   pkg/dplR/man/bai.in.Rd
   pkg/dplR/man/bai.out.Rd
   pkg/dplR/man/ccf.series.rwl.Rd
   pkg/dplR/man/chron.Rd
   pkg/dplR/man/cms.Rd
   pkg/dplR/man/combine.rwl.Rd
   pkg/dplR/man/common.interval.Rd
   pkg/dplR/man/corr.rwl.seg.Rd
   pkg/dplR/man/corr.series.seg.Rd
   pkg/dplR/man/crn.plot.Rd
   pkg/dplR/man/detrend.Rd
   pkg/dplR/man/detrend.series.Rd
   pkg/dplR/man/ffcsaps.Rd
   pkg/dplR/man/fill.internal.NA.Rd
   pkg/dplR/man/gini.coef.Rd
   pkg/dplR/man/glk.Rd
   pkg/dplR/man/hanning.Rd
   pkg/dplR/man/insert.ring.Rd
   pkg/dplR/man/interseries.cor.Rd
   pkg/dplR/man/morlet.Rd
   pkg/dplR/man/net.Rd
   pkg/dplR/man/plot.rwl.Rd
   pkg/dplR/man/po.to.wc.Rd
   pkg/dplR/man/pointer.Rd
   pkg/dplR/man/powt.Rd
   pkg/dplR/man/print.redfit.Rd
   pkg/dplR/man/rasterPlot.Rd
   pkg/dplR/man/rcs.Rd
   pkg/dplR/man/read.ids.Rd
   pkg/dplR/man/redfit.Rd
   pkg/dplR/man/rwi.stats.running.Rd
   pkg/dplR/man/rwl.stats.Rd
   pkg/dplR/man/sea.Rd
   pkg/dplR/man/seg.plot.Rd
   pkg/dplR/man/sens1.Rd
   pkg/dplR/man/sens2.Rd
   pkg/dplR/man/skel.plot.Rd
   pkg/dplR/man/spag.plot.Rd
   pkg/dplR/man/strip.rwl.Rd
   pkg/dplR/man/tbrm.Rd
   pkg/dplR/man/wavelet.plot.Rd
   pkg/dplR/man/wc.to.po.Rd
   pkg/dplR/man/write.compact.Rd
   pkg/dplR/man/write.crn.Rd
   pkg/dplR/man/write.rwl.Rd
   pkg/dplR/man/write.tridas.Rd
   pkg/dplR/man/write.tucson.Rd
   pkg/dplR/man/xskel.ccf.plot.Rd
   pkg/dplR/man/xskel.plot.Rd
Log:
Added library() calls: examples run even if default packages are detached.


Modified: pkg/dplR/man/bai.in.Rd
===================================================================
--- pkg/dplR/man/bai.in.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/bai.in.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -50,6 +50,8 @@
 \seealso{ \code{\link{bai.out}} }
 \examples{
 library(graphics)
+library(stats)
+library(utils)
 ## Toy
 n <- 100
 ## Make three fake tree-ring series to show that these funcs work on rwl objects

Modified: pkg/dplR/man/bai.out.Rd
===================================================================
--- pkg/dplR/man/bai.out.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/bai.out.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -50,8 +50,10 @@
   Nevada Reno, \acronym{USA}.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{bai.in}} }
 \examples{
+library(graphics)
+library(utils)
 \dontrun{
-library(graphics)
+library(stats)
 ## Toy
 n <- 100
 ## Make three fake tree-ring series to show that these funcs work on rwl objects

Modified: pkg/dplR/man/ccf.series.rwl.Rd
===================================================================
--- pkg/dplR/man/ccf.series.rwl.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/ccf.series.rwl.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -102,6 +102,7 @@
   \bold{28}(4), 251\enc{–}{--}258.
 }
 \examples{
+library(utils)
 data(co021)
 dat <- co021
 ## Create a missing ring by deleting a year of growth in a random series

Modified: pkg/dplR/man/chron.Rd
===================================================================
--- pkg/dplR/man/chron.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/chron.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -46,7 +46,9 @@
 \seealso{ \code{\link{read.rwl}}, \code{\link{detrend}},
   \code{\link{ar}}, \code{\link{crn.plot}}
 }
-\examples{data(ca533)
+\examples{library(graphics)
+library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.crn <- chron(ca533.rwi, prefix = "CAM")
 plot(ca533.crn,xlab="Year",ylab="RWI")

Modified: pkg/dplR/man/cms.Rd
===================================================================
--- pkg/dplR/man/cms.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/cms.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -65,6 +65,7 @@
 }
 \seealso{ \code{\link{detrend}}, \code{\link{chron}}, \code{\link{rcs}} }
 \examples{library(graphics)
+library(utils)
 data(gp.rwl)
 data(gp.po)
 gp.rwi <- cms(rwl = gp.rwl, po = gp.po)

Modified: pkg/dplR/man/combine.rwl.Rd
===================================================================
--- pkg/dplR/man/combine.rwl.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/combine.rwl.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -30,7 +30,8 @@
 
 \author{ Christian Zang.  Patched by Mikko Korpela. }
 
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 data(co021)
 combi1 <- combine.rwl(list(ca533, co021))
 ## or alternatively for data.frames to combine

Modified: pkg/dplR/man/common.interval.Rd
===================================================================
--- pkg/dplR/man/common.interval.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/common.interval.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -37,6 +37,7 @@
 \seealso{ \code{\link{seg.plot}} }
 
 \examples{
+library(utils)
 data(co021)
 co021.s <- common.interval(co021, type="series", make.plot=TRUE)
 co021.y <- common.interval(co021, type="years", make.plot=TRUE)

Modified: pkg/dplR/man/corr.rwl.seg.Rd
===================================================================
--- pkg/dplR/man/corr.rwl.seg.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/corr.rwl.seg.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -127,7 +127,8 @@
   \code{\link{corr.series.seg}}, \code{\link{skel.plot}},
   \code{\link{series.rwl.plot}}, \code{\link{ccf.series.rwl}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 crs <- corr.rwl.seg(co021, seg.length = 100, label.cex = 1.25)
 names(crs)
 ## Average correlation and p-value for the first few series

Modified: pkg/dplR/man/corr.series.seg.Rd
===================================================================
--- pkg/dplR/man/corr.series.seg.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/corr.series.seg.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -77,7 +77,8 @@
   \code{\link{corr.series.seg}}, \code{\link{skel.plot}},
   \code{\link{series.rwl.plot}}, \code{\link{ccf.series.rwl}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 dat <- co021
 ## Create a missing ring by deleting a year of growth in a random series
 flagged <- dat$"641143"

Modified: pkg/dplR/man/crn.plot.Rd
===================================================================
--- pkg/dplR/man/crn.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/crn.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -56,7 +56,9 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{chron}}
 }
-\examples{data(cana157)
+\examples{library(graphics)
+library(utils)
+data(cana157)
 crn.plot(cana157,xlab='Year',ylab='RWI')
 plot(cana157,xlab='Year',ylab='RWI', main='Twisted Tree Heartrot Hill')
 # with added spline

Modified: pkg/dplR/man/detrend.Rd
===================================================================
--- pkg/dplR/man/detrend.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/detrend.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -90,7 +90,8 @@
 }
 \author{ Andy Bunn.  Improved by Mikko Korpela. }
 \seealso{ \code{\link{detrend.series}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ## Detrend using modified exponential decay. Returns a data.frame
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 

Modified: pkg/dplR/man/detrend.series.Rd
===================================================================
--- pkg/dplR/man/detrend.series.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/detrend.series.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -192,6 +192,7 @@
   related to negative output values is based on work by Jacob Cecile. }
 \seealso{ \code{\link{detrend}} }
 \examples{library(stats)
+library(utils)
 ## Using a plausible representation of a tree-ring series
 gt <- 0.5 * exp (-0.05 * 1:200) + 0.2
 noise <- c(arima.sim(model = list(ar = 0.7), n = 200, sd = 0.5))+2

Modified: pkg/dplR/man/ffcsaps.Rd
===================================================================
--- pkg/dplR/man/ffcsaps.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/ffcsaps.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -50,14 +50,15 @@
 
 \seealso{ \code{\link{hanning}}, \code{\link{detrend}} }
 
-\examples{docFile <- system.file("doc", "math-dplR.pdf", package="dplR")
+\examples{library(graphics)
+library(utils)
+docFile <- system.file("doc", "math-dplR.pdf", package="dplR")
 cat("See the following PDF for mathematical details:\n")
 cat(docFile, sep="\n")
 \dontrun{
 if (interactive() && requireNamespace("Biobase")) {
     Biobase::openPDF(docFile)
 }
-library(graphics)
 ## Use series CAM011 from the Campito data set
 data(ca533)
 series <- ca533[, "CAM011"]

Modified: pkg/dplR/man/fill.internal.NA.Rd
===================================================================
--- pkg/dplR/man/fill.internal.NA.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/fill.internal.NA.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -54,6 +54,7 @@
 }
 \examples{
 library(graphics)
+library(stats)
 foo <- data.frame(x1=c(rnorm(5), NA, NA, rnorm(3)),
                   x2=c(rnorm(10)),
                   x3=c(NA, NA, rnorm(3), NA, rnorm(4)),

Modified: pkg/dplR/man/gini.coef.Rd
===================================================================
--- pkg/dplR/man/gini.coef.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/gini.coef.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -40,6 +40,7 @@
 if (interactive() && requireNamespace("Biobase")) {
     Biobase::openPDF(docFile)
 }}
+library(utils)
 data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.crn <- chron(ca533.rwi, prefix = "CAM")

Modified: pkg/dplR/man/glk.Rd
===================================================================
--- pkg/dplR/man/glk.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/glk.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -56,7 +56,8 @@
   Netherlands, 276 p.
 }
 
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.glk <- glk(ca533)
 mean(ca533.glk, na.rm = TRUE)
 }

Modified: pkg/dplR/man/hanning.Rd
===================================================================
--- pkg/dplR/man/hanning.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/hanning.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -28,6 +28,7 @@
 \seealso{ \code{\link[stats]{filter} } }
 
 \examples{library(graphics)
+library(utils)
 data(ca533)
 yrs <- as.numeric(rownames(ca533))
 y <- ca533[, 1]

Modified: pkg/dplR/man/insert.ring.Rd
===================================================================
--- pkg/dplR/man/insert.ring.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/insert.ring.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -30,7 +30,8 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{dplR}}
 }
-\examples{data(gp.rwl)
+\examples{library(utils)
+data(gp.rwl)
 series <- gp.rwl$"50A"
 names(series) <- rownames(gp.rwl)
 series <- series[!is.na(series)]

Modified: pkg/dplR/man/interseries.cor.Rd
===================================================================
--- pkg/dplR/man/interseries.cor.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/interseries.cor.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -56,7 +56,8 @@
 }
 \author{ Andy Bunn, patched and improved by Mikko Korpela  }
 \seealso{ \code{\link{rwl.stats}}, \code{\link{rwi.stats}} }
-\examples{data(gp.rwl)
+\examples{library(utils)
+data(gp.rwl)
 foo <- interseries.cor(gp.rwl)
 # compare to: 
 # corr.rwl.seg(rwl=gp.rwl,make.plot=FALSE)$overall

Modified: pkg/dplR/man/morlet.Rd
===================================================================
--- pkg/dplR/man/morlet.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/morlet.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -44,7 +44,8 @@
 }
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{wavelet.plot}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.crn <- chron(ca533.rwi, prefix = "CAM", prewhiten = FALSE)
 Years <- as.numeric(rownames(ca533.crn))

Modified: pkg/dplR/man/net.Rd
===================================================================
--- pkg/dplR/man/net.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/net.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -76,7 +76,8 @@
 \author{
   Mikko Korpela
 }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.net <- net(ca533.rwi)
 tail(ca533.net$all)

Modified: pkg/dplR/man/plot.rwl.Rd
===================================================================
--- pkg/dplR/man/plot.rwl.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/plot.rwl.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -29,7 +29,9 @@
 \seealso{
   \code{\link{read.rwl}}
 }
-\examples{data(co021)
+\examples{library(graphics)
+library(utils)
+data(co021)
 plot(co021, plot.type="seg")
 plot(co021, plot.type="spag")
 plot(co021, plot.type="spag", zfac=2)

Modified: pkg/dplR/man/po.to.wc.Rd
===================================================================
--- pkg/dplR/man/po.to.wc.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/po.to.wc.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -38,6 +38,7 @@
 }
 \examples{
 \dontrun{
+library(utils)
 data(gp.po)
 all(wc.to.po(po.to.wc(gp.po)) == gp.po)
 }

Modified: pkg/dplR/man/pointer.Rd
===================================================================
--- pkg/dplR/man/pointer.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/pointer.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -112,6 +112,7 @@
 \seealso{ \code{\link{skel.plot}} }
 
 \examples{## Pointer years calculation on ring-width series. Returns a data.frame.
+library(utils)
 data(gp.rwl)
 py <- pointer(rwl=gp.rwl, rgv.thresh=10, nseries.thresh=75,
               round.decimals=2)

Modified: pkg/dplR/man/powt.Rd
===================================================================
--- pkg/dplR/man/powt.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/powt.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -34,7 +34,8 @@
 }
 \seealso{\code{\link{rcs}}
 }
-\examples{data(gp.rwl)
+\examples{library(utils)
+data(gp.rwl)
 gp.pt <- powt(gp.rwl)
 }
 \author{

Modified: pkg/dplR/man/print.redfit.Rd
===================================================================
--- pkg/dplR/man/print.redfit.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/print.redfit.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -69,7 +69,8 @@
 \seealso{
   \code{\link{redfit}}
 }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 t <- as.numeric(row.names(ca533))
 x <- ca533[[1]]
 idx <- which(!is.na(x))

Modified: pkg/dplR/man/rasterPlot.Rd
===================================================================
--- pkg/dplR/man/rasterPlot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/rasterPlot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -88,7 +88,9 @@
   requires one of the following \code{\link{capabilities}}:
   \code{"png"}, \code{"aqua"} or \code{"cairo"}.
 }
-\examples{plot(1:5, type = "n")
+\examples{library(graphics)
+library(stats)
+plot(1:5, type = "n")
 foo <- runif(5, min = 1, max = 5)
 rasterPlot(quote(points(foo)))
 }

Modified: pkg/dplR/man/rcs.Rd
===================================================================
--- pkg/dplR/man/rcs.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/rcs.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -90,7 +90,8 @@
 }
 \seealso{ \code{\link{detrend}}, \code{\link{chron}}, \code{\link{cms}},
   \code{\link{ffcsaps}} }
-\examples{data(gp.rwl)
+\examples{library(utils)
+data(gp.rwl)
 data(gp.po)
 gp.rwi <- rcs(rwl = gp.rwl, po = gp.po, biweight = TRUE,
               rc.out = TRUE, make.plot = FALSE)

Modified: pkg/dplR/man/read.ids.Rd
===================================================================
--- pkg/dplR/man/read.ids.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/read.ids.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -248,7 +248,8 @@
 \author{ Andy Bunn (original version) and Mikko Korpela (patches,
   \code{\var{stc}="auto"}, \code{\var{fix.typos}}, etc.). }
 \seealso{ \code{\link{rwi.stats}}, \code{\link{read.rwl}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 read.ids(ca533, stc = c(3, 2, 3))
 autoread.ids(ca533)
 }

Modified: pkg/dplR/man/redfit.Rd
===================================================================
--- pkg/dplR/man/redfit.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/redfit.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -368,6 +368,7 @@
 # Note the long-term low-freq signal in the data. E.g.,
 # crn.plot(cana157)
 
+library(utils)
 data(cana157)
 yrs <- as.numeric(rownames(cana157))
 x <- cana157[, 1]

Modified: pkg/dplR/man/rwi.stats.running.Rd
===================================================================
--- pkg/dplR/man/rwi.stats.running.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/rwi.stats.running.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -223,7 +223,8 @@
 \seealso{ \code{\link{detrend}}, \code{\link{cor}},
   \code{\link{read.ids}}, \code{\link{rwi.stats}},
   \code{\link{corr.rwl.seg}}  } 
-\examples{data(gp.rwl)
+\examples{library(utils)
+data(gp.rwl)
 data(gp.po)
 gp.rwi <- cms(rwl = gp.rwl, po = gp.po)
 gp.ids <- read.ids(gp.rwl, stc = c(0, 2, 1))

Modified: pkg/dplR/man/rwl.stats.Rd
===================================================================
--- pkg/dplR/man/rwl.stats.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/rwl.stats.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -66,7 +66,8 @@
 }
 \author{ Andy Bunn.  Slightly improved by Mikko Korpela. }
 \seealso{ \code{\link{rwi.stats}}, \code{\link{read.rwl}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 rwl.stats(ca533)
 summary(ca533)
 }

Modified: pkg/dplR/man/sea.Rd
===================================================================
--- pkg/dplR/man/sea.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/sea.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -60,6 +60,7 @@
 }
 
 \examples{library(graphics)
+library(utils)
 data(cana157)
 event.years <- c(1631, 1742, 1845)
 cana157.sea <- sea(cana157, event.years)

Modified: pkg/dplR/man/seg.plot.Rd
===================================================================
--- pkg/dplR/man/seg.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/seg.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -23,7 +23,8 @@
 }
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{spag.plot}} }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 seg.plot(co021, main = "Campito Mountain")
 }
 \keyword{ hplot }

Modified: pkg/dplR/man/sens1.Rd
===================================================================
--- pkg/dplR/man/sens1.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/sens1.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -35,7 +35,8 @@
 }
 \author{ Mikko Korpela, based on original by Andy Bunn }
 \seealso{ \code{\link{sens2}}, \code{\link{rwl.stats}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 sens1(ca533.rwi[, 1])
 }

Modified: pkg/dplR/man/sens2.Rd
===================================================================
--- pkg/dplR/man/sens2.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/sens2.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -34,7 +34,8 @@
 }
 \author{ Mikko Korpela, based on original by Andy Bunn }
 \seealso{ \code{\link{sens1}}, \code{\link{rwl.stats}} }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 sens2(ca533.rwi[, 1])
 }

Modified: pkg/dplR/man/skel.plot.Rd
===================================================================
--- pkg/dplR/man/skel.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/skel.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -75,7 +75,7 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{  \code{\link{Devices}}, \code{\link{hanning}}  }
 
-\examples{library(grDevices)
+\examples{library(utils)
 data(co021)
 x <- co021[,33]
 x.yrs <- as.numeric(rownames(co021))
@@ -85,6 +85,7 @@
 ## On a raw ring width series - dated with names
 skel.plot(x, yr.vec = x.yrs, sname = x.name, master = TRUE)
 \dontrun{
+library(grDevices)
 ## Try cross-dating
 y <- co021[, 11]
 y.yrs <- as.numeric(rownames(co021))

Modified: pkg/dplR/man/spag.plot.Rd
===================================================================
--- pkg/dplR/man/spag.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/spag.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -36,7 +36,8 @@
 }
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{seg.plot}} }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 spag.plot(co021)
 spag.plot(co021, zfac = 2)
 }

Modified: pkg/dplR/man/strip.rwl.Rd
===================================================================
--- pkg/dplR/man/strip.rwl.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/strip.rwl.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -77,6 +77,7 @@
   \code{\link{rwi.stats}}
 }
 \examples{
+library(utils)
 data(anos1)
 anos1.ids <- read.ids(anos1, stc = c(4, 3, 1))
 srwl <- strip.rwl(anos1, ids = anos1.ids, verbose = TRUE)

Modified: pkg/dplR/man/tbrm.Rd
===================================================================
--- pkg/dplR/man/tbrm.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/tbrm.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -53,7 +53,8 @@
 \author{ Mikko Korpela }
 \seealso{ \code{\link{chron}} }
 \examples{
-
+library(stats)
+library(utils)
 foo <- rnorm(100)
 tbrm(foo)
 mean(foo)

Modified: pkg/dplR/man/wavelet.plot.Rd
===================================================================
--- pkg/dplR/man/wavelet.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/wavelet.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -85,7 +85,9 @@
 }
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{morlet}}, \code{\link{ffcsaps}}}
-\examples{data(ca533)
+\examples{library(stats)
+library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.crn <- chron(ca533.rwi, prefix = "CAM", prewhiten = FALSE)
 Years <- as.numeric(rownames(ca533.crn))
@@ -96,6 +98,8 @@
 \dontrun{
 ## Alternative palette with better separation of colors
 if (require(RColorBrewer)) {
+  ## RColorBrewer (1.1.2) uses but does not import rgb()
+  library(grDevices)
   wavelet.plot(out.wave, key.cols=rev(brewer.pal(10, "Spectral")),
                useRaster = NA)
 }

Modified: pkg/dplR/man/wc.to.po.Rd
===================================================================
--- pkg/dplR/man/wc.to.po.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/wc.to.po.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -35,7 +35,8 @@
 \seealso{
   \code{\link{po.to.wc}}, \code{\link{rcs}}, \code{\link{read.tridas}}
 }
-\examples{data(gp.po)
+\examples{library(utils)
+data(gp.po)
 all(wc.to.po(po.to.wc(gp.po)) == gp.po)
 }
 \keyword{ manip }

Modified: pkg/dplR/man/write.compact.Rd
===================================================================
--- pkg/dplR/man/write.compact.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/write.compact.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -54,7 +54,8 @@
 \seealso{ \code{\link{write.rwl}}, \code{\link{write.tucson}},
   \code{\link{write.tridas}}, \code{\link{read.compact}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 fname <- write.compact(rwl.df = co021,
                        fname = tempfile(fileext=".rwl"),
                        append = FALSE, prec = 0.001)

Modified: pkg/dplR/man/write.crn.Rd
===================================================================
--- pkg/dplR/man/write.crn.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/write.crn.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -76,7 +76,8 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{chron}}, \code{\link{read.crn}}
 }
-\examples{data(ca533)
+\examples{library(utils)
+data(ca533)
 ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
 ca533.crn <- chron(ca533.rwi, prefix = "CAM")
 fname1 <- write.crn(ca533.crn, tempfile(fileext=".crn"))

Modified: pkg/dplR/man/write.rwl.Rd
===================================================================
--- pkg/dplR/man/write.rwl.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/write.rwl.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -40,7 +40,8 @@
   \code{\link{write.compact}}, \code{\link{write.tridas}},
   \code{\link{read.rwl}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 co021.hdr <- list(site.id = "CO021",
                   site.name = "SCHULMAN OLD TREE NO. 1, MESA VERDE",
                   spp.code = "PSME", state.country = "COLORADO",

Modified: pkg/dplR/man/write.tridas.Rd
===================================================================
--- pkg/dplR/man/write.tridas.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/write.tridas.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -368,7 +368,8 @@
   \code{\link{write.compact}}, \code{\link{write.crn}},
   \code{\link{read.tridas}} }
 
-\examples{## Write raw ring widths
+\examples{library(utils)
+## Write raw ring widths
 data(co021)
 fname1 <- write.tridas(rwl.df = co021,
     fname = tempfile(fileext=".xml"), prec = 0.01,

Modified: pkg/dplR/man/write.tucson.Rd
===================================================================
--- pkg/dplR/man/write.tucson.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/write.tucson.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -101,7 +101,8 @@
   \code{\link{write.rwl}}, \code{\link{write.compact}},
   \code{\link{write.tridas}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 co021.hdr <- list(site.id = "CO021",
                   site.name = "SCHULMAN OLD TREE NO. 1, MESA VERDE",
                   spp.code = "PSME", state.country = "COLORADO",

Modified: pkg/dplR/man/xskel.ccf.plot.Rd
===================================================================
--- pkg/dplR/man/xskel.ccf.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/xskel.ccf.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -64,7 +64,8 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{ccf}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 dat <- co021
 #corrupt a series
 bad.series <- dat$"641143"

Modified: pkg/dplR/man/xskel.plot.Rd
===================================================================
--- pkg/dplR/man/xskel.plot.Rd	2015-03-23 14:22:41 UTC (rev 977)
+++ pkg/dplR/man/xskel.plot.Rd	2015-03-23 14:27:43 UTC (rev 978)
@@ -64,7 +64,8 @@
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }
 \seealso{ \code{\link{ccf}}
 }
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
 dat <- co021
 #corrupt a series
 bad.series <- dat$"641143"

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